DN134776

Overview
NameDN134776
Unique NameDN134776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 8.138e-19
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  118 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 387
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.063e-18
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  130 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 375
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  GA KE+L++TI
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.039e-18
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   94 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEELQQTI 375
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  133 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEELQQTIAKH 384
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.005e-17
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  100 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 402
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V GA +  +  TI KH ++  A
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   85 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 375
            + E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+++ +
Sbjct:    9 SAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  133 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 378
            +LVVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  103 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 390
            EQL + +  K ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  133 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 387
            +LVVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA    ++Q IA ++
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  133 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 390
            +LV+VDF A WCGPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++GA    L+Q I K+ A
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
The following BLAST results are available for this feature:
BLAST of DN134776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO_OPHHA8.138e-1944.44Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK1.063e-1851.22Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB4.039e-1848.42Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY1.535e-1752.94Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
NGLY1_CAEBR2.005e-1741.58Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXL4_ARATH5.832e-1743.30Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
TRX1_YEAST1.697e-1651.22Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO1_CAEEL1.697e-1639.58Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX2_YEAST2.895e-1647.06Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_PLAF72.895e-1646.51Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca01b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134776 ID=DN134776; Name=DN134776; organism=Citrus sinensis; type=EST; length=599bp
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGNNNGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATNNNGGTGCCACACCGTTGAGGCCTGGA
ACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCCATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTTGAA
back to top