DN134776

Overview
NameDN134776
Unique NameDN134776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:149..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16
Identity = 43/97 (44.33%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  100 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 387
            N QL K++   +LVV+DF A+WCGPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.780e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  121 NETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 384
            N   +LVVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  GA ++ L+Q I  H
Sbjct:   17 NAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.780e-16
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  112 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 387
            Q +  + +LVV+DF A+WCGPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.448e-16
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   91 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 381
            E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ GA KE+L+  IA+
Sbjct:  457 EDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.876e-15
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  103 EQLQKSNETK------QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 387
            +Q+  S+E K      +LVVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.876e-15
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  133 QLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 384
            +LVV+DF A WCGPC+ IAP L ELA +  + V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L + + KH
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  103 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 390
            ++  K   + +++++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L+  + K LA
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  100 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 402
            N  L++S +  +L+++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ + + I +H +   A
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  136 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 384
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  139 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 375
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++GA    L++ I
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
The following BLAST results are available for this feature:
BLAST of DN134776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO2_DROYA2.895e-1644.33Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO_ICTPU3.780e-1646.67Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO2_DROME3.780e-1643.01Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TXND2_HUMAN6.448e-1643.30Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRX1_SCHPO1.876e-1539.60Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIOT_DROME1.876e-1544.71Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO_COPCM2.450e-1535.71Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
NGLY1_CAEEL2.450e-1536.63Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_CHLTR4.180e-1545.24Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
TRX3_YEAST9.312e-1543.04Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionwca01b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134776 ID=DN134776; Name=DN134776; organism=Citrus sinensis; type=EST; length=599bp
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGNNNGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATNNNGGTGCCACACCGTTGAGGCCTGGA
ACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCCATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTTGAA
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