DN134776

Overview
NameDN134776
Unique NameDN134776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:149..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  124 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 390
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  136 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 387
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  136 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 387
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  127 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 387
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  130 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 399
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   91 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 381
            E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L+++I++
Sbjct:  419 EEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  124 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 387
            E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   50 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  121 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 381
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V A    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  121 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 399
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of DN134776 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 31/86 (36.05%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  139 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 390
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
The following BLAST results are available for this feature:
BLAST of DN134776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRXM_SPIOL3.312e-1238.46Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_LISMO3.312e-1239.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN3.312e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_GRIPA3.312e-1243.82Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF1_ARATH4.325e-1238.46Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TXND2_MOUSE7.378e-1236.08Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXM_CHLRE7.378e-1240.00Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TR548_MIMIV9.636e-1235.96Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
GLRX3_XENTR9.636e-1234.41Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_PORYE1.258e-1136.05Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionwca01b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134776 ID=DN134776; Name=DN134776; organism=Citrus sinensis; type=EST; length=599bp
TCGTTGGGTGGAGTAGTGGTGGTAATAACCGNNNGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATNNNGGTGCCACACCGTTGAGGCCTGGA
ACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCCATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTTGAA
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