CX043952

Overview
NameCX043952
Unique NameCX043952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20
Identity = 60/189 (31.75%), Postives = 99/189 (52.38%), Query Frame = -3
Query:  179 PNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEY-----ILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDN-QWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKR 727
            P+ + + C +   EY +++ KLA  L      +LG++ + +   G   ++     ++   +YP CP+PD  +G   H+D + +TIL Q+   GLQVF D+  WV   P+ G LVVN+GD L I++N  F SV HR   +HV  R S+  +  G  ++I  S  P+ +L      P+Y      +Y + +
Sbjct:  150 PSHHLKYC-EIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSM-AYLWGPPSDIMIS--PLPKLVDPLQSPLYPSLTWKQYLATK 334          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20
Identity = 58/175 (33.14%), Postives = 98/175 (56.00%), Query Frame = -3
Query:  272 NWRDTLTISTLASTNL-DPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKE---YILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQD-QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFF-MGHNAEI 778
            +W  T  +  L  +NL D  +  +  R A +++ K +  LAE L +LL   LGL+  +L ++    +   +      YP CP+P++  G   H+D   + +L QD ++ GLQ+  D  W+ V P+   +V+N+GD L++I+N ++KS+ HRVV    G R+S+  F+  G +AEI
Sbjct:   88 DWESTFYLRHLPQSNLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEI 262          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.496e-20
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = -3
Query:  179 NEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYI------LLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHD--NQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKR 724
            ++Y   C     E+ + +  LA+ L EL  +ALGL  E +  +   ++        +   +YP CP P   LG   H+D  F T +LQ  + GLQ+F    ++WV V  + G +VVN+GD  QI++N +F SV HR V +    R+S+  +F+G  A +     P++E   A  P  YR     EY   R
Sbjct:  154 HDYRHFCA-VMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLG-YFLGPPAHV--KVAPLRE-ALAGTPAAYRAVTWPEYMGVR 338          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = -3
Query:  179 NEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYI------LLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHD--NQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKR 724
            ++Y   C     E+ + +  LA+ L EL  +ALGL  E +  +   ++        +   +YP CP P   LG   H+D  F T +LQ  + GLQ+F    ++WV V  + G +VVN+GD  QI++N +F SV HR V +    R+S+  +F+G  A +     P++E   A  P  YR     EY   R
Sbjct:  154 HDYRHFCA-VMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLG-YFLGPPAHV--KVAPLRE-ALAGTPAAYRAVTWPEYMGVR 338          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.334e-20
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = -3
Query:  179 NEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYI------LLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHD--NQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKR 724
            ++Y   C     E+ + +  LA+ L EL  +ALGL  E +  +    +        +   +YP CP P   LG   H+D  F T +LQ  + GLQ+F    ++WV V  + G +VVN+GD  QI++N +F SV HR V +    R+S+  +F+G  A +     P++E   A  P  YR     EY   R
Sbjct:  154 HDYRHFCA-VMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLG-YFLGPPAHV--KVAPLRE-ALAGTPAAYRAVTWPEYMGVR 338          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.654e-19
Identity = 61/198 (30.81%), Postives = 101/198 (51.01%), Query Frame = -3
Query:  155 PEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLE---IGCPKEYILLCQYYPPCPQPDL-------TLGATGHSDPSFLTILLQDQIGGLQV-FHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKRFSTVLDDN 715
            P   R+A  EY  +V K+   + E ++  LG+K  + L         + IL   +YPPCP  +         +G   H+DP  +++L  +   GLQ+  +D  W+ V P       N+GD LQ+++N +FKSV+HRV+A+    RVS+  +F G    + +   P+  L   E+  +Y +F  SEY +  +++ L DN
Sbjct:  120 PGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSM-IYFAG--PSLTQRIAPLTCLIDNEDERLYEEFTWSEYKNSTYNSRLSDN 314          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.287e-19
Identity = 66/199 (33.17%), Postives = 105/199 (52.76%), Query Frame = -3
Query:  131 PEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHL---LEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQ-DQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKRFSTVLDDNSPLHQLKL 715
            P   R+   +Y   + K+A  L  +++  LGL++E L   L     +E  LL    P        LG + HSD + LT+L+Q +++ GL +  D +WV ++PI+G  VVNIGD ++I+SN  +KS++HR V +    R+S+  F   H+ E     GP+ +L   EN   Y+     +Y  +  +  LD  S L Q+KL
Sbjct:  162 PTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNREDELL----PSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAF---HDPEYGTKIGPLPDLVK-ENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 56/171 (32.75%), Postives = 87/171 (50.88%), Query Frame = -3
Query:  191 RDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEY 703
            R     Y++ + ++A+ + E+L   + + +E+   I   +   L    Y P        G   H+D SFLTIL QDQIGGL++ ++ QW+ V+P +  L VNIGD  Q +SN  ++SV+HRV++     R+S+  FF+    E         E+     P  YR F   EY
Sbjct:  153 RTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSI-AFFVCPYLE--------TEIDCFGYPKKYRRFSFREY 314          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.549e-17
Identity = 58/197 (29.44%), Postives = 95/197 (48.22%), Query Frame = -3
Query:  155 EYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLC---QYYPPCPQPDLT----LGATGHSDPSFLTILLQDQIGGLQV-FHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKRFSTVLDDN 721
            E P   R     YI  V  +   + EL++  LG++  + L      E    C    +YPPCP+        +G   H+DP  +++L  +   GLQ+   D  WV V P      +N+GD LQ+++N +FKSVKHRV+A     R+S+  +F G    + ++  P+  +       +Y++F   EY    +++ L DN
Sbjct:  128 ENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSM-IYFGG--PALSENIAPLPSVMLKGEECLYKEFTWCEYKKAAYTSRLADN 321          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.506e-17
Identity = 54/193 (27.98%), Postives = 100/193 (51.81%), Query Frame = -3
Query:  158 PEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLC---QYYPPCPQPD---LTLGATGHSDPSFLTILLQDQIGGLQV-FHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKRFSTVLDD 715
            P++ R++  EY+K + +++  + E+++  LG++    L      E    C    +YP   +     + +G   H+DP  +++L  +   GLQ+   D  WV V P      +N+GD LQ+++N +FKSVKHRV+A     R+S+  +F G    + +   P+  L   ++  +Y++F  S+Y S  + + L D
Sbjct:  134 PQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISM-IYFGG--PPLSQKIAPLPCLVPEQDDWLYKEFTWSQYKSSAYKSKLGD 323          
The following BLAST results are available for this feature:
BLAST of CX043952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3OX2_ARATH1.146e-2031.75Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO1_BRAJU1.146e-2033.141-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
G3O23_WHEAT1.496e-2032.63Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT1.954e-2032.63Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT3.334e-2032.63Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G2OX1_ARATH1.654e-1930.81Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
NCS1_COPJA6.287e-1933.17S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
G2OX7_ARATH6.951e-1832.75Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX_PHACN1.549e-1729.44Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX2_ARATH4.506e-1727.98Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E03-J6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043952 ID=CX043952; Name=CX043952; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTTAGTTAAAACATATTTTTTTCGGAATTATTGGGA
AAGAGTTCACAACAGGACTCCGCAATTTGTAAATTGTTGTTACCAAATAC
GAGTAATTTATACAAATATTGCCAGCTTCATAGTTTGAGCTGATGGAGGG
GAGAATTGTCATCAAGCACCGTAGAAAATCGTTTGCTAAAATATTCACTT
GCACGAAAATCTCTGTAAATAGGAGGATTTTCTGCGGATGTCAACTCTTT
GATCGGCCCATAAGACTTTGGGATTTCTGCATTATGTCCCATGAAAAAGC
ATGGCACGGAAACCCTTGGACCGACATGACTGGCGACTACTCTGTGTTTA
ACACTCTTGAACTTGTCGTTTGATATAATCTGGAGGAAGTCCCCTATGTT
TACCACTAAGCCTCCCACAATGGGTTGAACACCAACCCATTGATTGTCAT
GAAAGACTTGAAGGCCGCCGATTTGGTCTTGCAGAAGAATGGTAAGAAAT
GAAGGGTCTGAATGCCCGGTAGCTCCCAATGTCAAATCTGGCTGAGGGCA
AGGTGGATAGTATTGGCAGAGAAGGATGTATTCTTTAGGGCATCCAATCT
CTAGTAAATGTTCAGCCTTCAGCCCAAGAGCCAGTGATAATAATTCAAAC
AGAGTTTCAGCCAATTTTGTGACATTTTTAATGTACTCTCTCGCAGCATC
TCTGCAAACTTCTGGGTATTCGTTGGGGTCTAAATTGGTGGAAGCTAAGG
TAGAAATTGTCAACGTGTCCCGCCAATTAGCTGTTCGTGAGTAATGCAGA
TCAAAGTTGC
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