DN134772

Overview
NameDN134772
Unique NameDN134772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134772_ssr12 microsatellite DN134772_ssr12:12..29. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134772_ssr158 microsatellite DN134772_ssr158:158..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5666 contig Csv1_Contig5666:1..497. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.688e-28
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  206 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAAL 490
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT RG AAL
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAAL 100          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.215e-28
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG   R K+KY  +LRK     P+  GP HFRAP++IF++ VRGMIPHKT RGAAAL R
Sbjct:    8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALER 103          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.325e-27
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  206 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAAL 490
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT RG AAL
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAAL 99          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.549e-26
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 2
Query:  206 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAAL 490
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT RG  AL
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIAL 100          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.312e-25
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT RG AAL R
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALER 101          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.894e-24
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT RG AAL R
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALER 100          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  215 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G    + M + R+  K        GP   R P +IF RTVRGM+P K+ RG  A  R
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRR 108          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  215 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P  GP + R P  IF R VRGM+P KTKRG  A  R
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKR 107          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.136e-11
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTKRGAAA 487
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P   GP + R P  IF RTVRGM+P+K  +G  A
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREA 96          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  215 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RTVRGM+P KT RG  A  R
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKR 96          
The following BLAST results are available for this feature:
BLAST of DN134772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL16A_SCHPO3.688e-2862.1160S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL16_NEUCR8.215e-2862.5060S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_DICDI5.325e-2760.0060S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16C_SCHPO1.549e-2658.9560S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL16A_YEAST1.312e-2556.8460S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST1.894e-2454.7460S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL13_ARCFU1.273e-1242.5550S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METKA2.172e-1240.4350S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RLSX_METTH3.136e-1137.63Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_PYRKO4.096e-1141.4950S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionwca01b03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134772 ID=DN134772; Name=DN134772; organism=Citrus sinensis; type=EST; length=497bp
TACGGCCGGGGGAGAGAGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAA
CCCTAGCTCCACATTNNNGCCTCACATATATATTTGACAACACTCGGAAA
CCTCCAGTTCGAGAGAGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCA
ACAAAATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCT
GCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTG
GCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGT
CCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGA
AGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCACGGT
CCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGG
GATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGAT
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