CX043948

Overview
NameCX043948
Unique NameCX043948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.030e-29
Identity = 78/207 (37.68%), Postives = 113/207 (54.59%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIY---LQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +LA    + F F G A    E V+   L V   EALAVN  L LH +        +  + +L  +++L+P ++T+VEQE+N N   FL RF   + +Y  +F+S++    +  K    +    L RE+ N++ CEG  R ERHEPL KWR+R   AGF+P  L S        LL  +S E Y++EE +G L LGW ++PLI + AW
Sbjct:  392 KLAEMCGVPFEFHGAALCCTE-VEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYS-EKYTLEERDGALYLGWKNQPLITSCAW 596          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.316e-28
Identity = 78/218 (35.78%), Postives = 113/218 (51.83%), Query Frame = -3
Query:  272 ARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLE---ACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEG---YSVEETE----------GCLTLGWHSRPLIAASAW 877
            A ++N++F F  V   RLEDV+ WML V   E++AVN ++Q+HK L       + +   LG IR+ NP  + + EQE+ HN  +   R   +L YYS MFD++    A        + E+   REI N+V CEGS R ERH     WR  L   GFR L +      Q+ MLL ++ ++    ++VE ++          G +TL W  +PL   SAW
Sbjct:  439 AEAMNLQFEFHPVV-DRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYD--GTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 71/207 (34.30%), Postives = 104/207 (50.24%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLE-ACPLQPEKAL--AEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +LA    + F F+ +  S+   V P  L   P E L VN   QLH +        +  + +L  +++LNPK++TVVEQ+ N N   F  RF  A  YYS +F+SL+   P + ++ +      L R+I N+V CEG  R+ER+E   KWR R+  AGF P  + +        L+       Y ++E  G L   W  + LI ASAW
Sbjct:  387 QLAEDNGVSFKFKAMP-SKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAW 592          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.778e-25
Identity = 76/212 (35.85%), Postives = 116/212 (54.72%), Query Frame = -3
Query:  260 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQ-LHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEAC---PLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVP 883
            + A+ + + F F  VA  ++ ++ P  L V+ +EA+AV+ +   L+ + GSD          L  ++ L PK++TVVEQ+ +H    FL RF  A++YYS +FDSL AC     +   A+ +  L REI NV+   G +R         WR +   +GFR + L  NA  QA++LL +F ++GY++ E  G L LGW    L+ ASAW   P
Sbjct:  579 DFAQKLGLPFEFFPVA-DKVGNLDPQRLNVNKREAVAVHWLQHSLYDVTGSDTN-------TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSREIRNVLAVGGPSR-SGEVKFNNWREKFQQSGFRGVSLAGNAAAQATLLLGMFHSDGYTLAEDNGALKLGWKDLCLLTASAWRPPP 780          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.961e-25
Identity = 80/211 (37.91%), Postives = 120/211 (56.87%), Query Frame = -3
Query:  263 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQ-LHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQ--PEKALAEIYL-QREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAV 883
            + A ++ + F F  VA  +  +V P  L V+ +EA+AV+ +   L+ + GSD          L  I+ L PK++T+VEQ+ +H+   FL RF  A++YYS +FDSL+A   +  PE+ + E  L  REI NV+   G AR    +    WR +LA +GFR   L  +A  QAS+LL +F ++GY++ E  G L LGW    L+ ASAW  +
Sbjct:  462 DFADTLGLPFEFCAVA-EKAGNVDPEKLGVTRREAVAVHWLHHSLYDVTGSD-------SNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWRPI 662          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 78/211 (36.97%), Postives = 120/211 (56.87%), Query Frame = -3
Query:  263 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQ-LHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQ--PEKALAEIYL-QREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAV 883
            + A ++ + F F  VA  +  ++ P  L V+ +EA+AV+ +   L+ + GSD          L  I+ L PK++T+VEQ+ +H+   FL RF  A++YYS +FDSL+A   +  PE+ + E  L  REI NV+   G AR    +    WR +LA +GFR   L  +A  QA++LL +F ++GY++ E  G L LGW    L+ ASAW  +
Sbjct:  455 DFADTLGLPFEFCPVA-DKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSD-------SNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRPI 655          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 78/211 (36.97%), Postives = 120/211 (56.87%), Query Frame = -3
Query:  263 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQ-LHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQ--PEKALAEIYL-QREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAV 883
            + A ++ + F F  VA  +  ++ P  L V+ +EA+AV+ +   L+ + GSD          L  I+ L PK++T+VEQ+ +H+   FL RF  A++YYS +FDSL+A   +  PE+ + E  L  REI NV+   G AR    +    WR +LA +GFR   L  +A  QA++LL +F ++GY++ E  G L LGW    L+ ASAW  +
Sbjct:  455 DFADTLGLPFEFCPVA-DKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSD-------SNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRPI 655          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 78/211 (36.97%), Postives = 120/211 (56.87%), Query Frame = -3
Query:  263 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQ-LHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQ--PEKALAEIYL-QREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAV 883
            + A ++ + F F  VA  +  ++ P  L V+ +EA+AV+ +   L+ + GSD          L  I+ L PK++T+VEQ+ +H+   FL RF  A++YYS +FDSL+A   +  PE+ + E  L  REI NV+   G AR    +    WR +LA +GFR   L  +A  QA++LL +F ++GY++ E  G L LGW    L+ ASAW  +
Sbjct:  454 DFADTLGLPFEFCPVA-DKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSD-------SNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRPI 654          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 83/264 (31.44%), Postives = 114/264 (43.18%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGS---------------------------------------------------DPARNSPM------EMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEAC---PLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAW 883
            E A  ++I F F  V  SRL+ +    L+V   EALAV+S+LQLH  L S                                                   D A + P+      +  L  I  L+PK+M V EQ+S+HN    ++R   +LY Y+ +FD LE       Q    + ++    EI N++ CEG  R ERHE L KW  R+  AGF  + L   A  QA  LL     +GY ++E  GC  + W  RPL + SAW
Sbjct:  216 EEAEKLDIPFQFNPVV-SRLDCLNVEQLRVKTGEALAVSSVLQLHTFLASDDDLMRKNCALRFQNNPSGVDLQRVLMMSHGSAAEARENDMSNNNGYSPSGDSASSLPLPSSGRTDSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAW 478          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 78/211 (36.97%), Postives = 119/211 (56.40%), Query Frame = -3
Query:  263 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQ-LHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQ--PEKALAEIYL-QREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAV 883
            + A ++ + F F  VA  +  ++ P  L V+ +EA+AV+ +   L+ + GSD          L  I+ L PK++T+VEQ+ +H+   FL RF  A++YYS +FDSL+A   +  PE+ + E  L  REI NV+   G AR    +    WR +LA +GFR   L  +A  QA +LL +F ++GY++ E  G L LGW    L+ ASAW  +
Sbjct:  446 DFADTLGLPFEFCPVA-DKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSD-------SNTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRPI 646          
The following BLAST results are available for this feature:
BLAST of CX043948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SCL5_ARATH2.030e-2937.68Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
SCL28_ARATH1.316e-2835.78Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SCL1_ARATH2.743e-2634.30Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCR_IPONI1.778e-2535.85Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SCR_MAIZE3.961e-2537.91Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
SCR2_ORYSJ3.353e-2436.97Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI3.353e-2436.97Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSI3.353e-2436.97Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCL3_ARATH3.353e-2431.44Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
SCR1_ORYSJ7.471e-2436.97Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E01-J2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043948 ID=CX043948; Name=CX043948; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTTTAAATGTGGCAATTTTTCGGATGGGCATGAGCTGTCAATTT
CAAGGTTAAACACAGTTGCATGAACAGGTAATAAAGCACCAGTGCAGAAT
AGTAACTACACATTACACAAATTGATCTCCTGATTCCCTAAAAAGGGAAA
TATCTCATTCAAAACCCAGAAACACAACCAGCCAGCTACTGCCCTTCTTC
TTTTTCTTTTTTACAGCAGATGATAATTAATTACTATTCTGATGACTCAT
CATTACATCTGGCACGGCATGCCAAGCCGAAGCCGCTATGAGAGGCCGGC
TGTGCCAGCCGAGAGTCAAACACCCTTCGGTTTCCTCAACAGAGTAACCC
TCGGCCGAAAAGAGAGTCAAGAGCATACTAGCTTGTCTGAAAGCATTAGA
CCCAAGATGTAAAGGCCTAAAGCCGGCACCTGCGAGCCGATTCCTCCATT
TAGCCAGCGGCTCGTGCCTTTCAACTCGAGCCGACCCTTCACAACACACC
ACGTTACAAATCTCTCTTTGTAAGTAAATCTCGGCTAAGGCCTTTTCCGG
CTGAAGCGGACAGGCCTCGAGCGAGTCAAACATGGTTGAATAATAGTACA
AAGCCGTCGTGAACCGGTCCAAGAACTCTGGCTGGTTGTGATTCGATTCT
TGCTCGACAACCGTCATGATTTTCGGGTTCAGGTTCCGAATCCAACCCAG
CACCATTTCCATAGGCGAATTCCGGGCCGGGTCTGACCCGAGCAATTTGT
GCAGTTGCAAGATTGAGTTTACGGCCAAGGCTTCCTTCGGGCTGACCTGG
AGCATCCACGGCTTCACATCCTCGAGCCTGGAAGCCGCCACGCCACGAAA
GGTGAACCTGATGTTGACGGAGCGCGCCAACTCGG
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