CX043948

Overview
NameCX043948
Unique NameCX043948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17
Identity = 55/201 (27.36%), Postives = 92/201 (45.77%), Query Frame = -3
Query:  272 NIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEI---YLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAW 865
            N+ F +  +A +  E++    L ++  E   VN IL+L        + NSP +  L   R++NP +    E    +N P FL RF  AL++ S++FD  E    + +     +    + R+  +V+ CEGS R  R E   +W+ R+  AGFRP  L     +    ++     + + ++     +  GW  R L A S W
Sbjct:  379 NVPFEYSFIAKN-WENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCW 578          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: MOC_ORYSJ (Protein MONOCULM 1 OS=Oryza sativa subsp. japonica GN=MOC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = -3
Query:  272 TFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESN------HNQPEFLDRFTTALYYYSTMFDSLEAC--PLQPEK-ALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTL-FSAEGYSVEETEGCLTLGWHSRPLIAASAW 853
            T  G AA+         L+  P E LAVN ++ LH L G D      +   L W++ ++P ++T+ E+E+        +  +   R   A+ +YS +F++LEA   P   E+ A+ +  L REI   V   G +       + +W      AGF    L + A  QA +LL L + +EGY V+E  G   LGW +RPL++ SAW
Sbjct:  241 TSTGAAAAASTAAAATGLEFHPDETLAVNCVMFLHNLAGHDE-----LAAFLKWVKAMSPAVVTIAEREAGGGGGGGDHIDDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAV---GPSGGRWWRGIERWGGAARAAGFAARPLSAFAVSQARLLLRLHYPSEGYLVQEARGACFLGWQTRPLLSVSAW 436          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16
Identity = 61/184 (33.15%), Postives = 101/184 (54.89%), Query Frame = -3
Query:  272 QVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQRE-----ICNVVCCEGSA-RVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEG-YSVEETE-GCLTLGWHSRPLIAASAW 799
            +V P E LAVN +LQL+KLL   P   + ++  L   ++LNP+++T+ E E + N+  F +R   AL +YS +F+SLE  P     +   + ++RE     I  ++  E +    ER E   +WR  +  AGF  + L + A  QA +LL  ++    YS+ E++ G ++L W+  PL+  S+W
Sbjct:  405 RVDPDEVLAVNFMLQLYKLLDETP---TIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLE--PNLGRDSEERVRVERELFGRRISGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSW 583          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  455 LARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEK---ALAEIYLQREICNVVCCEGSARVERHEPL 880
            LA+S  + F F     S  + V+   L + P  A+ VN    LH +     +  +  + +L  I++L+PK++T+VEQESN N   FL RF   L YY+ MF+S++A   + +K   +  +  + R+I N++ CE S RVERHE L
Sbjct:  138 LAQSCGVPFEFHDAIMSGCK-VQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVL 281          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 59/186 (31.72%), Postives = 98/186 (52.69%), Query Frame = -3
Query:  272 QVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEK---ALAEIYLQREICNVVCCEG-----SARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETE-GCLTLGWHSRPLIAASAW 799
            +V P E L VN +L+L+KLL       + +   L   R+LNP+I+T+ E E + N+ EF +R   +L +YS +F+SLE    +  K    +  +   R I ++V  +        R    E   +WR  +  AGF P+   + A  QA +LL  ++ +  YS+ E+E G ++L W++ PL+  S+W
Sbjct:  359 RVDPDEVLVVNFMLELYKLLDETA---TTVGTALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLDRDSKERLRVERVLFGRRIMDLVRSDDDNNKPGTRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPGFISLAWNNVPLLTVSSW 541          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.409e-14
Identity = 68/209 (32.54%), Postives = 97/209 (46.41%), Query Frame = -3
Query:  272 ARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEA-CPLQPEKALAEIYLQREICNVVCCEGSARVER---HEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEET---EGCLTLGWHSRPLIAASAW 877
            A S+   F+F        E  +P  L++   EAL  N +L L  L    P     +   L   + LNPK++T+VE+E       F++RF  +L++YS +FDSLEA  P+Q     A   ++R            R+ R    E    W   L   GFR + +      QA +LL LF+ +GY VEE       L L W SR L++AS W
Sbjct:  298 AASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHLSYRAP---ESVASFLNGAKTLNPKLVTLVEEEVGSVIGGFVERFMDSLHHYSAVFDSLEAGFPMQNR---ARTLVERVFFGPRIAGSLGRIYRTGGEEERRSWGEWLGEVGFRGVPVSFANHCQAKLLLGLFN-DGYRVEEVGVGSNKLVLDWKSRRLLSASLW 499          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = -3
Query:  272 ARSVNIRFTFRGVA----ASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQ-----REICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAW 877
            A+   + F ++ +A    A +LED     L +   E   VN + +   L        S  + VL  I  +NP +         +N P F+ RF  AL+++S++FD LE   + P +    ++L+     RE  NV+ CEG  RVER E   +W  R   +G   +    +  + +   +  F  + + +++    L  GW  R ++A S W
Sbjct:  509 AKLFGVPFEYKAIAKKWDAIQLED-----LDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLET--IVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVW 712          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.196e-13
Identity = 55/188 (29.26%), Postives = 85/188 (45.21%), Query Frame = -3
Query:  272 LQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESN-------HNQPEFLDRFTTALYYYSTMFDSLEAC--PLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGC--LTLGWHSRPLIAASAW 802
            L V P E LA+N +  +H +     +R SP + V+   R L P+I+TVVE+E++           EFL  F   L ++   F+S E        E+ + E    R I ++V CE S   ER E   KW  R+  +GF  +            LL  +    +S+ +      + L W  +P++ ASAW
Sbjct:  345 LDVKPDEVLAINCVGAMHGIA----SRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAW 528          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = -3
Query:  272 EALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESN-HNQPEFLDRFTTALYYYSTMFDSLEA--CPLQPEKALAE-IYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEET-EGCLTLGWHSRPLIAASAW 784
            EA+ +N +L L +     P   S +   L   + LNPK++T+V +E        FL RF   L+ +S +FDSLEA      P +   E +++   + N +    +A     E  A W   L   GF+PL +      QA +LL+LF+ +G+ VEE  +  L LGW SR L++AS W
Sbjct:  306 EAVVINCMLHLPRFSHQTP---SSVISFLSEAKTLNPKLVTLVHEEVGLMGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANPARGFVERVFIGPWVANWLT-RITANDAEVESFASWPQWLETNGFKPLEVSFTNRCQAKLLLSLFN-DGFRVEELGQNGLVLGWKSRRLVSASFW 476          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 63/230 (27.39%), Postives = 99/230 (43.04%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVA-ASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPE------------FLDRFTTALYYYSTMFDSLEAC--PLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLT-----------LGWHSRPLIAASAW 883
            + AR + + F+FR V  A  L D+    L +    A A  ++  ++ L G    R++     +  +R L P+++TVVE+E++   PE            F+  F   L ++S   DSLE        E+   E  + R I ++V C  S   ER E  A W  R+  AGF P     +       LL  +  EG+S+ +  G              L W  +P++ ASAW
Sbjct:  377 KFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNCVNALRGVARGRDA----FVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYK-EGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVWASAW 601          
The following BLAST results are available for this feature:
BLAST of CX043948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SCL30_ARATH3.040e-1727.36Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
MOC_ORYSJ1.155e-1631.86Protein MONOCULM 1 OS=Oryza sativa subsp. japonica... [more]
SCL4_ARATH2.574e-1633.15Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL13_ARATH2.845e-1535.86Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL7_ARATH1.844e-1431.72Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
NSP2_MEDTR2.409e-1432.54Nodulation-signaling pathway 2 protein OS=Medicago... [more]
SCL9_ARATH9.154e-1426.07Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SHR_ARATH1.196e-1329.26Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SCL26_ARATH7.749e-1333.52Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
SHR2_ORYSI1.726e-1227.39Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E01-J2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043948 ID=CX043948; Name=CX043948; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTTTAAATGTGGCAATTTTTCGGATGGGCATGAGCTGTCAATTT
CAAGGTTAAACACAGTTGCATGAACAGGTAATAAAGCACCAGTGCAGAAT
AGTAACTACACATTACACAAATTGATCTCCTGATTCCCTAAAAAGGGAAA
TATCTCATTCAAAACCCAGAAACACAACCAGCCAGCTACTGCCCTTCTTC
TTTTTCTTTTTTACAGCAGATGATAATTAATTACTATTCTGATGACTCAT
CATTACATCTGGCACGGCATGCCAAGCCGAAGCCGCTATGAGAGGCCGGC
TGTGCCAGCCGAGAGTCAAACACCCTTCGGTTTCCTCAACAGAGTAACCC
TCGGCCGAAAAGAGAGTCAAGAGCATACTAGCTTGTCTGAAAGCATTAGA
CCCAAGATGTAAAGGCCTAAAGCCGGCACCTGCGAGCCGATTCCTCCATT
TAGCCAGCGGCTCGTGCCTTTCAACTCGAGCCGACCCTTCACAACACACC
ACGTTACAAATCTCTCTTTGTAAGTAAATCTCGGCTAAGGCCTTTTCCGG
CTGAAGCGGACAGGCCTCGAGCGAGTCAAACATGGTTGAATAATAGTACA
AAGCCGTCGTGAACCGGTCCAAGAACTCTGGCTGGTTGTGATTCGATTCT
TGCTCGACAACCGTCATGATTTTCGGGTTCAGGTTCCGAATCCAACCCAG
CACCATTTCCATAGGCGAATTCCGGGCCGGGTCTGACCCGAGCAATTTGT
GCAGTTGCAAGATTGAGTTTACGGCCAAGGCTTCCTTCGGGCTGACCTGG
AGCATCCACGGCTTCACATCCTCGAGCCTGGAAGCCGCCACGCCACGAAA
GGTGAACCTGATGTTGACGGAGCGCGCCAACTCGG
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