CX043933

Overview
NameCX043933
Unique NameCX043933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = -3
Query:  317 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 685
            R++K++ +L      + S     DDL +++ +I  P +  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A + +
Sbjct:    5 RINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  284 LMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED------WKPVLNINTIIYGLYHLFTE-PNHEDPLNHDAAELLRDSPAYFESNVR 610
            L   E+++ P EG Y+ G F F   VPP Y +  P VKC TKV+HPNI+ +G++CL++LR++      W+P  N+  +++GL  LF +  +  D LN  AA++   +   F   VR
Sbjct:   58 LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVR 173          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  317 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 685
            R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A + +
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  317 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 685
            R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A + +
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  317 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 685
            R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A + +
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  317 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 685
            R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A + +
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  317 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 685
            R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A + +
Sbjct:    5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.564e-17
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  305 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPA 583
            P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ W P L I T++  +  L + PN +DPL +D AE  + + A
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEA 134          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.564e-17
Identity = 45/128 (35.16%), Postives = 71/128 (55.47%), Query Frame = -3
Query:  305 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPA 685
            R+ K+   L    A  IS    ++++  F V I  P +  Y+ G F     +P  YP  APKV+  TK+YHPNID  G +CL++L++ W P L I T++  +  L + PN +DPL+ + A+  + + A
Sbjct:    9 RIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEA 136          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  305 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPA 583
            P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ W P L I T++  +  L + PN +DPL +D AE  + + A
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEA 134          
The following BLAST results are available for this feature:
BLAST of CX043933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
UBCD1_DROME2.676e-1733.06Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC12_CAEEL2.676e-1737.93NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UB2D3_RAT2.676e-1732.26Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.676e-1732.26Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.676e-1732.26Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA2.676e-1732.26Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN2.676e-1732.26Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UBE2N_RAT4.564e-1739.78Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC36_ARATH4.564e-1735.16Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_PONAB5.961e-1739.78Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14D05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D05-H10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043933 ID=CX043933; Name=CX043933; organism=Citrus sinensis; type=EST; length=816bp
CCGGGGCCCCCTTTTTTTTTTTGGAGTAACGTATCAACTCACAGCATAAC
ATCAGTATACTTTTGTGTAGGTTATACAGTTGGCGTTTTCAGGAGTTAAA
CCCTCATTTTAAGATCACAAGAGGAATGAATAGAAAGTACTAAAAGCTTT
CAATAACTTGTGCAAACCACGAGCATTCAAGTTACCAATAACATTGTGTC
AGTTGGCGCTGAGTTCTATGGAACAAAAGCTACATAACTGGCTCAAAATA
TTCGTCCCCTATATACCCACCTTGTAAAGCCATTCTCACGTTTGACTCAA
AATAAGCTGGGCTATCCCTCAACAATTCAGCAGCATCATGATTAAGGGGG
TCCTCATGATTTGGTTCCGTGAAAAGATGATATAATCCGTAAATAATAGT
GTTTATGTTGAGGACAGGCTTCCAATCTTCTCGTAAGACGTTGAGGCAAA
CATTTCCTTCCAAGTCAATATTTGGGTGGTAGACCTTGGTCTTACACTTA
ACCTTTGGTGCGTCATGTGGATAAATAGGGGGAACTTCAAAAGAGAACAC
AAATGTGCCATTTTGATAATATCCTTCATCAGGTTTGATTGAGACCTCAA
AATTCATTAAATCATCCTGGCCGTTGGGGAATGATATTTTGCAAGCTTCG
GGTAGGTTCAGCTCAGTGATATCTTTGTGAAGACGCAATTCCCCAGCGCA
TTGCTTTTTAACAGGTGTACCTCCTGTGTTATTCTCAGCATCTTCTTTCT
GTTTTTCCTTTACTTTAAATAGTCGAATCATATCTCCTACAACTGCACAA
AGAGAAACACCAAACA
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