CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNE7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dxs PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = -1 Query: 253 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 738 D P RFPRGNGIG LP + L IGK L +GD + +L YGS+V + A +L IS TV +ARF KPLD +LI LA + ++T EEG + GGFGS + L D + + + +PD ++H SP + +E GL+ R ++ +L G Sbjct: 468 DGPIAMRFPRGNGIGVPLPEEGWES-LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAH---DLQVPVLPIGVPDLLVEHASPDESKQELGLTPRQMADRILEKFG 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 66/165 (40.00%), Postives = 93/165 (56.36%), Query Frame = -1 Query: 250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 732 P+ R+PRG+G A + + PLEIGK + G +VA+L +G + + + + L + TV D RF KPLD L+R+LA HE+L+TVEE S+ GG GS V FL G+L L L LPD Y++H P++ L E GL + I V L+ LG+ Sbjct: 477 PAAVRYPRGSGPNASIEPALE--PLEIGKAVVRRRGSKVALLVFGVQLPEALQVGDALDA-----TVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVLRPILHLG---LPDYYVEHAKPSEMLAECGLDAAGIEVAVRKRLAALGK 631
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = -1 Query: 280 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 732 P+ R+PRG+G G + PL G+G I EG +A+L +GS++Q C+ AA ++++ TVA+ RF KPLD DL+ LA HE+L+TVEE +V GG GS V L+ G L+L LPD ++D G P+ L E GL I Sbjct: 463 PAAVRYPRGSGSGVAQQKEMQMLPL--GRGEIRREGAEIALLAFGSMLQPCLEAA-----EELNATVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARGRTVPVLQLG---LPDTFLDQGDPSQMLSECGLDREGI 604
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus pumilus (strain SAFR-032) GN=dxs PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = -1 Query: 256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768 HMV TA DD P RFPRGNG+G + K P IG +L G IL +G+ ++ + AA L+ + SV V +ARF KPLD ++ + +E ++T+EE + GGFGS V + + +K+ M +PD +I+HGS LEE GL+ ++ T+ +L Sbjct: 456 HMVNTAIQYDDGPIAMRFPRGNGLGVKMDEQLKTIP--IGSWEVLHPGKDAVILTFGTTIKMALQAAEELQKEGKSVRVVNARFIKPLDEAMLNDILSEGIPILTIEEAVLQGGFGSSVLEY--IHDKKASHIKVERMGIPDEFIEHGSVDALLEEIGLTKVQVADTLRDML 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PHOPR (1-deoxy-D-xylulose-5-phosphate synthase OS=Photobacterium profundum GN=dxs PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.626e-22 Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = -1 Query: 325 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 732 PS R+PRGNG+GA + + T LEIGKG I +G+++AIL +G++++ + AA L + TVAD RF KPLD +LI +LA H++L+TVEE ++ GG GS V F+ S L L + LPDR+++ G+ Sbjct: 470 PSAVRYPRGNGLGAEI--QKEMTALEIGKGIIRRQGEKIAILNFGTMLEYALEAAEKLNA-----TVADMRFVKPLDEELILELAANHDVLVTVEENAIAGGAGSGVIEFMMKSKCLKPVLNIG---LPDRFVEQGT 596
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.626e-22 Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = -1 Query: 268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738 D P+ R+PRG G G + + PL GKG I +G R+A+L +GS++ C+ A + ++ TV + RF KPLD +L+ LA EHE+L+TVEE ++ GG GS V L G+ ++L + L D ++D G PA L + GL I +V Sbjct: 461 DTPTAVRYPRGTGPGVQIKQEMQIVPL--GKGEIRRQGTRIALLAFGSMLSPCLEAGD-----ELDATVVNMRFVKPLDQELVMTLAAEHELLVTVEENTIMGGAGSAVLECLASQGV---NIRLLQLGLSDNFLDQGDPAQMLSDCGLDKTGIIKSV 608
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.626e-22 Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A+ P+ R+PRG G G +P + T + +GKG + EG RVAIL +G++V + AA +++ TVA+ RF KP+D L+R+LA H+ L+TVEEG V GG GS L SG++ L+L LPD +IDHG PA L + GL I+ ++ Sbjct: 459 ALQQPNPTAVRYPRGAGTG--VPTVKEFTEIPLGKGEVRRQTSQPEGKRVAILAFGTMVAPSLAAA-----EELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQLG---LPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22 Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = -1 Query: 250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732 P+ R+PRG G A P + PLEIGKG + +G +VA+L +G + + + A + I TV D RF KPLD L+ ++A HE+L+T+EE ++ GG G+ V FL G++ L L LPD Y++H PA L E GL + I A+V + + + Sbjct: 477 PAAVRYPRGTGPNA--PISGDLEPLEIGKGVVRRQGGKVALLVFGVQLTEALQVA-----EQIDATVVDMRFVKPLDEALVLEMAAGHELLVTIEENAIMGGAGAAVGEFLAREGVVKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22 Identity = 67/158 (42.41%), Postives = 87/158 (55.06%), Query Frame = -1 Query: 268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738 D P+ R+PRG G GA + P IGKG + G +VAIL +GS+V + AA L + TVAD RF KPLD +LIR+LA HE+++TVEE V GG GS L G+ L L LPD Y++HG PA L GL + I ++ Sbjct: 463 DTPTAVRYPRGTGPGAEIQQQMAALP--IGKGVVRRRGKQVAILAFGSMVHPALAAAEALDA-----TVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGSGCGEALQAMGLAVPTLHLG---LPDDYVEHGDPALLLSLCGLDAAGIEKSI 610
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACISJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax sp. (strain JS42) GN=dxs PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22 Identity = 64/169 (37.87%), Postives = 92/169 (54.44%), Query Frame = -1 Query: 253 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 756 T A D P R+PRG G+G + +G P GKG + G R+AIL +G+++ + AA Q + TV + R+ KPLDT L+ Q+A EH+ L+TVEEG + GG GS V L +G+ L+L LPD +I+HG PA L GL + + ++ G Sbjct: 460 TTAYEQDHPVAVRYPRGAGVGVAPLPDLEGLPF--GKGEVRRTGQRIAILAFGTLLYPALQAA-----QALDATVVNMRWAKPLDTQLLLQVAAEHDALVTVEEGCIMGGAGSAVAEALAAAGLQRPLLQLG---LPDVFIEHGDPAKLLALQGLDAAGMQRSITERFG 618 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |