CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNE7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = -1
Query:  253 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 738
            D P   RFPRGNGIG  LP     + L IGK   L +GD + +L YGS+V   +  A +L    IS TV +ARF KPLD +LI  LA +   ++T EEG + GGFGS +   L      D  + +  + +PD  ++H SP +  +E GL+ R ++  +L   G
Sbjct:  468 DGPIAMRFPRGNGIGVPLPEEGWES-LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAH---DLQVPVLPIGVPDLLVEHASPDESKQELGLTPRQMADRILEKFG 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 66/165 (40.00%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 732
            P+  R+PRG+G  A +    +  PLEIGK  +   G +VA+L +G  + + +   + L +     TV D RF KPLD  L+R+LA  HE+L+TVEE S+ GG GS V  FL   G+L   L L    LPD Y++H  P++ L E GL +  I   V   L+ LG+
Sbjct:  477 PAAVRYPRGSGPNASIEPALE--PLEIGKAVVRRRGSKVALLVFGVQLPEALQVGDALDA-----TVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVLRPILHLG---LPDYYVEHAKPSEMLAECGLDAAGIEVAVRKRLAALGK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = -1
Query:  280 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 732
            P+  R+PRG+G G       +  PL  G+G I  EG  +A+L +GS++Q C+ AA     ++++ TVA+ RF KPLD DL+  LA  HE+L+TVEE +V GG GS V   L+  G     L+L    LPD ++D G P+  L E GL    I
Sbjct:  463 PAAVRYPRGSGSGVAQQKEMQMLPL--GRGEIRREGAEIALLAFGSMLQPCLEAA-----EELNATVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARGRTVPVLQLG---LPDTFLDQGDPSQMLSECGLDREGI 604          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus pumilus (strain SAFR-032) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = -1
Query:  256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768
            HMV TA   DD P   RFPRGNG+G  +    K  P  IG   +L  G    IL +G+ ++  + AA  L+ +  SV V +ARF KPLD  ++  + +E   ++T+EE  + GGFGS V  +  +       +K+  M +PD +I+HGS    LEE GL+   ++ T+  +L
Sbjct:  456 HMVNTAIQYDDGPIAMRFPRGNGLGVKMDEQLKTIP--IGSWEVLHPGKDAVILTFGTTIKMALQAAEELQKEGKSVRVVNARFIKPLDEAMLNDILSEGIPILTIEEAVLQGGFGSSVLEY--IHDKKASHIKVERMGIPDEFIEHGSVDALLEEIGLTKVQVADTLRDML 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PHOPR (1-deoxy-D-xylulose-5-phosphate synthase OS=Photobacterium profundum GN=dxs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.626e-22
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = -1
Query:  325 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 732
            PS  R+PRGNG+GA +    + T LEIGKG I  +G+++AIL +G++++  + AA  L +     TVAD RF KPLD +LI +LA  H++L+TVEE ++ GG GS V  F+  S  L   L +    LPDR+++ G+
Sbjct:  470 PSAVRYPRGNGLGAEI--QKEMTALEIGKGIIRRQGEKIAILNFGTMLEYALEAAEKLNA-----TVADMRFVKPLDEELILELAANHDVLVTVEENAIAGGAGSGVIEFMMKSKCLKPVLNIG---LPDRFVEQGT 596          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.626e-22
Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            D P+  R+PRG G G  +    +  PL  GKG I  +G R+A+L +GS++  C+ A +     ++  TV + RF KPLD +L+  LA EHE+L+TVEE ++ GG GS V   L   G+    ++L  + L D ++D G PA  L + GL    I  +V
Sbjct:  461 DTPTAVRYPRGTGPGVQIKQEMQIVPL--GKGEIRRQGTRIALLAFGSMLSPCLEAGD-----ELDATVVNMRFVKPLDQELVMTLAAEHELLVTVEENTIMGGAGSAVLECLASQGV---NIRLLQLGLSDNFLDQGDPAQMLSDCGLDKTGIIKSV 608          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.626e-22
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G  +P   + T + +GKG +       EG RVAIL +G++V   + AA     +++  TVA+ RF KP+D  L+R+LA  H+ L+TVEEG V GG GS     L  SG++   L+L    LPD +IDHG PA  L + GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTG--VPTVKEFTEIPLGKGEVRRQTSQPEGKRVAILAFGTMVAPSLAAA-----EELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQLG---LPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P+  R+PRG G  A  P +    PLEIGKG +  +G +VA+L +G  + + +  A     + I  TV D RF KPLD  L+ ++A  HE+L+T+EE ++ GG G+ V  FL   G++   L L    LPD Y++H  PA  L E GL +  I A+V + + +
Sbjct:  477 PAAVRYPRGTGPNA--PISGDLEPLEIGKGVVRRQGGKVALLVFGVQLTEALQVA-----EQIDATVVDMRFVKPLDEALVLEMAAGHELLVTIEENAIMGGAGAAVGEFLAREGVVKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22
Identity = 67/158 (42.41%), Postives = 87/158 (55.06%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            D P+  R+PRG G GA +       P  IGKG +   G +VAIL +GS+V   + AA  L +     TVAD RF KPLD +LIR+LA  HE+++TVEE  V GG GS     L   G+    L L    LPD Y++HG PA  L   GL +  I  ++
Sbjct:  463 DTPTAVRYPRGTGPGAEIQQQMAALP--IGKGVVRRRGKQVAILAFGSMVHPALAAAEALDA-----TVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGSGCGEALQAMGLAVPTLHLG---LPDDYVEHGDPALLLSLCGLDAAGIEKSI 610          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACISJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax sp. (strain JS42) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22
Identity = 64/169 (37.87%), Postives = 92/169 (54.44%), Query Frame = -1
Query:  253 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 756
            T A   D P   R+PRG G+G     + +G P   GKG +   G R+AIL +G+++   + AA     Q +  TV + R+ KPLDT L+ Q+A EH+ L+TVEEG + GG GS V   L  +G+    L+L    LPD +I+HG PA  L   GL +  +  ++    G
Sbjct:  460 TTAYEQDHPVAVRYPRGAGVGVAPLPDLEGLPF--GKGEVRRTGQRIAILAFGTLLYPALQAA-----QALDATVVNMRWAKPLDTQLLLQVAAEHDALVTVEEGCIMGGAGSAVAEALAAAGLQRPLLQLG---LPDVFIEHGDPAKLLALQGLDAAGMQRSITERFG 618          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_SYNE74.307e-2239.261-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PSEU54.307e-2240.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_NITMU4.307e-2241.451-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_BACP24.307e-2236.631-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_PHOPR5.626e-2243.801-deoxy-D-xylulose-5-phosphate synthase OS=Photoba... [more]
DXS_NITEC5.626e-2237.971-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_BURS35.626e-2239.521-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_PSEE47.347e-2238.271-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CHRVO7.347e-2242.411-deoxy-D-xylulose-5-phosphate synthase OS=Chromob... [more]
DXS_ACISJ7.347e-2237.871-deoxy-D-xylulose-5-phosphate synthase OS=Acidovo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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