CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.637e-21
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 732
            P+  R+PRG G  A++       P+EIGKG +  +G  VAIL +G  VQ   LA  ++ ++ +  TV D RF KPLD  L+ + A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL ++ I A +   L+L+G
Sbjct:  477 PAAVRYPRGTGPDALIETGLD--PVEIGKGVVRRQGQGVAILVFG--VQ---LADALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDTYVEHAKPAQMLAECGLDAQGIEAAINERLALIG 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BORPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella pertussis GN=dxs PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.637e-21
Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732
            P+  R+PRG G GA +       PL  GKG +  EG R+AILG+G++VQ  + AA       I   VAD RF KPLD +L+ +LA  H+ L+TVEE ++ GG GS V   L  +G+    L +  + LPD +IDHG  A  L   GL +  I   + +  G
Sbjct:  466 PASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDAMVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFG 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACWK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.138e-21
Identity = 59/161 (36.65%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  289 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 768
            H+V TA   +D P   R+ RGNG+G  +    K  P  IG    L EG + AIL +G+ +   + AA  L+   +SV V +ARF KP+D   + +L  ++  ++T+EE   +GGFG+ V  F + +G       +  M +PDR+I+HGS    LEE GL++
Sbjct:  456 HLVYTAMQYEDGPIALRYARGNGLGVQMDEELKAIP--IGTWETLKEGTQAAILTFGTTIPMAMEAAERLEQAGVSVKVVNARFIKPMDEAYLHELLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSA--LIERMGIPDRFIEHGSVTKLLEEIGLTT 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROM5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.792e-21
Identity = 57/158 (36.08%), Postives = 93/158 (58.86%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P+  R PRG+G G  +  +    PL IG+G IL +G+ + I+ YGS+V   +  + +LK ++IS  V +ARF +PLD DLI  LAN+ + ++T+EEG+ +GGFGS +   L  + I    + +  + +PD  +DH SP     + GL    +S  +++
Sbjct:  470 PTALRIPRGSGRGVAV-MDEGWEPLNIGEGEILEDGEDILIVAYGSMVSSAIETSKLLKDKNISPCVINARFVRPLDKDLILPLANKIKKVVTMEEGTLIGGFGSAIVELLNDNDI---NIPVFRIGIPDVLVDHASPDQSKTQLGLMPNQMSENIIN 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.792e-21
Identity = 61/177 (34.46%), Postives = 101/177 (57.06%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            H++ TA V   +P   R+PRG G GA +  +    P  IG+  IL+ G  VAIL  G  V     A  +L    I  T+ + R+  PLD++L+ ++A  H+ L+TVEE  + GG GS +   L  +G+++  +K+ ++ +PD++++HG+ +    + GL  + I+  VLSL+G P E
Sbjct:  466 HLIYTA-VNSGKPFALRYPRGFGEGAEIESSLHNIP--IGQNEILVNGSDVAILATGKSVAFAKDALEILTESGIKPTLVNNRYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVN-KIKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 638          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.646e-21
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G       + T + +GKG +       EG RVAIL +G++V     A ++   +++  TVA+ RF KP+D  L+R+LA  H+ L+TVEEG V GG GS     L  SG++   ++L    LPD++IDHG PA  L + GL    I+ ++
Sbjct:  471 ALQQPNPTAVRYPRGAGTGVATV--KEFTEIPLGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAGEELDATVANMRFVKPIDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVIQLG---LPDQFIDHGDPAKLLAQCGLDGAGIAKSI 627          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.646e-21
Identity = 63/171 (36.84%), Postives = 91/171 (53.22%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T     D P   R+PRG+G+G  L       PL IGK   L  GD V +L YG++V      A+ML    +  TV +ARF KPLDT+LI  LA +   ++T+EEG + GGFGS V   L    ++     +  + +PD+ ++H +P     E GL+   ++  VL LL
Sbjct:  459 MLVTGINYTDGPIAMRYPRGSGLGVGLMEEG-WEPLPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQVM---APVTRIGVPDQLVEHATPDQSKAELGLTPAQVAERVLGLL 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.762e-21
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G       + T + +GKG +       EG RVAIL +G++V     A ++   +++  TVA+ RF KP+D  L+R+LA  H+ L+TVEEG V GG GS     L  SG++   ++L    LPD++IDHG PA  L + GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATV--KEFTEIPLGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAGEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVIQLG---LPDQFIDHGDPAKLLAQCGLDGAGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACHK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=dxs PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.762e-21
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  289 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 768
            H+V TA   +D P   R+ RGNG+G  +    K  P  IG    L EG + AIL +G+ +   + AA  L+   +SV V +ARF KP+D   +  L  ++  ++T+EE   +GGFG+ V  F + +G       +  M +PDR+I+HGS    LEE GL++
Sbjct:  456 HLVYTAMQYEDGPIALRYARGNGLGVHMDEELKAIP--IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSA--LVERMGIPDRFIEHGSVTKLLEEIGLTT 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACCZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.762e-21
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  289 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 768
            H+V TA   +D P   R+ RGNG+G  +    K  P  IG    L EG + AIL +G+ +   + AA  L+   +SV V +ARF KP+D   +  L  ++  ++T+EE   +GGFG+ V  F + +G       +  M +PDR+I+HGS    LEE GL++
Sbjct:  456 HLVYTAMQYEDGPIALRYARGNGLGVHMDEELKAIP--IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSA--LVERMGIPDRFIEHGSVTKLLEEIGLTT 612          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_PSE141.637e-2140.851-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BORPE1.637e-2140.371-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BACWK2.138e-2136.651-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_PROM52.792e-2136.081-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_DEHSC2.792e-2134.461-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_BURCM3.646e-2137.721-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_ACAM13.646e-2136.841-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_BURA44.762e-2137.721-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BACHK4.762e-2136.651-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACCZ4.762e-2136.651-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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