CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHELP (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxs PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.123e-21 Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T ++ P+ R+PRG+ G P T EIGKG I EG ++AIL +G+ + AA L + T+AD RF KPLD +L++QLA H++L+TVEE ++ GG GS V L L L P+ + ++ LPD +I HG + L E L I A + + L Sbjct: 460 MLYTGYCYNEGPTAIRYPRGSATGE--PQVETMTAYEIGKGLIKREGKKIAILNFGTTLASASQAAEALDA-----TLADMRFVKPLDVELVKQLATSHDLLVTVEENAIMGGAGSGV---LELLQQLKLPMPVLNIGLPDEFIKHGECGEILAELQLDGPGIEAQIRAYL 620
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEB9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS195) GN=dxs PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.123e-21 Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = -1 Query: 250 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 765 M+ T D PS R+PRG+ GA+ T L IGKG I G R+AIL +G+++ + AA + + TV D RF KPLD DL++++A HE+L+TVEE ++ GG G+ V L L P + + LPD +I HGSP + + L + I A + + L + Sbjct: 460 MLYTGYCYDAGPSAVRYPRGSATGAMQV--EAMTALPIGKGVIKRVGKRIAILNFGTLLASALTAA-----ESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGAGVLEQLQK---LRMPKAVLQIGLPDEFIKHGSPEEVTHDLQLDAEGILAQINAYLAQ 622
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.123e-21 Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A+ P+ R+PRG G G + T + +GKG + EG RVAIL +G++V + AA +++ TVA+ RF KP+D L+R+LA H+ ++TVEEG V GG GS L SG++ L+L LPD +IDHG PA L + GL I+ ++ Sbjct: 459 ALQQPNPTAVRYPRGAGTGVATV--KEFTEIPLGKGEVRRRTSQPEGKRVAILAFGTMVAPSLAAA-----EELDATVANMRFVKPVDAALVRELAETHDYVVTVEEGCVMGGAGSACVEALMESGVIRPVLQLG---LPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HALOH (1-deoxy-D-xylulose-5-phosphate synthase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dxs PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20 Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = -1 Query: 328 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 768 HM+ TA + +D+P R+PRG G G L +N + + IGKG +L +G V I+ GS V + AA +L Q I V +ARF KPLD +LI NE + +ITVEE ++ GGFGS + F+ + + +K++ + LPDR++ HG Sbjct: 456 HMIYTA-INNDQPVAIRYPRGEGYGVEL--DNDFSTIPIGKGELLCDGKDVLIIAVGSRVYPAMEAARVLSQQGIKAAVINARFIKPLDKNLILNKINECKKVITVEEHALKGGFGSAILEFINENDLRG--IKVKRLGLPDRFLPHG 598
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dxs PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20 Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A+ P+ R+PRG G G PL GKG + + G R+AIL +G++V + AA L + TVA+ RF KP+D L+R+LA H+ ++TVEEG V GG GS + SG++ L+L LPDR+IDHG PA L GL + I+ ++ Sbjct: 459 ALQQPNPTAVRYPRGAGTGVATVKQMAALPL--GKGEVRRQSTQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPIDAALVRELAETHDAVVTVEEGCVMGGAGSACVEAMMESGVIRPVLQLG---LPDRFIDHGDPAKLLASCGLDAAGIAKSI 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AZOSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcus sp. (strain BH72) GN=dxs PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20 Identity = 68/162 (41.98%), Postives = 89/162 (54.94%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 AV D P+ R+PRG G G V+P T L IGKG I G R+A+L +GS+ L + + + +VA+ RF KPLD LI +LA H +L+TVEE +V GG GS V F + + P LR + LPDR+IDHG A L GL I A + Sbjct: 460 AVCHDGPTAVRYPRGGGSG-VVPLEPM-TALPIGKGEIRRHGTRIAVLAFGSM-----LGVALEVGEALDASVANMRFVKPLDEALIAELAANHALLVTVEENAVIGGAGSEVARF--VDTLPQRPRVLR-LGLPDRFIDHGDQAQLLASVGLDKTGILAAI 611
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS1_GEOSL (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter sulfurreducens GN=dxs1 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20 Identity = 67/182 (36.81%), Postives = 97/182 (53.30%), Query Frame = -1 Query: 235 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGRPKEAL 768 HM+ TA V D P R+PRG G G +P + + + IG G IL EGD VAI+ G V + AA L + I TV +ARF KPLD ++I Q A +IT EE ++ GGFGS V L G+ ++++ + +PDR+++ G + G+ + I+A L+ G P AL Sbjct: 457 HMLKTA-VSHDGPIALRYPRGAGCG--IPLDQELREIPIGTGEILAEGDDVAIIAIGITVLPALEAARTLAEKGIRATVINARFVKPLDREMILQAARRTGCIITAEENALQGGFGSAVLELLADEGMTG--VRVKRLGIPDRFVEQGPQPQLRADLGIDAAGIAAATEAFLAAKGAPAPAL 633
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20 Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = -1 Query: 265 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 738 D P+ R PRG+G G L T L IG+G +L EGD + I+ YGS+V + A +L+ +S TV +ARF +PLD LI LA ++T+EEG++ GGFG+ V LT I L++ +PD+ +DH +P E GL+ ++ +L Sbjct: 468 DGPTALRIPRGSGEGVPLMEEGWET-LPIGRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAVLESLTDQDINVSMLRIG---IPDKLVDHATPQQSKEALGLTPAQMAERIL 622
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20 Identity = 59/172 (34.30%), Postives = 101/172 (58.72%), Query Frame = -1 Query: 256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768 HM+ TA V +P+ R+PRG+G+G + +++ LE+GKG +L EG +AIL G V + AA L+ + I TV +ARF KPLD +L+ ++ + ++TVEE + GGFGS + FL + I ++++ + + D + + + A+Q G+ + I+A V S++ Sbjct: 472 HMLHTA-VACGKPAAVRYPRGSGVGVTM--DSQPFSLELGKGEVLCEGGSLAILAVGDPVHPALTAAVQLREEGIYATVVNARFVKPLDRELLLRIVRSFKKILTVEENVLTGGFGSAILEFLEENDI--HGIQVKRLGIRDEFAEQATQAEQRRLYGIDEQGIAAAVRSMM 638
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHESR (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-7) GN=dxs PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20 Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T D PS R+PRG+ GA T L IGKG I G R+A+L +G+ LAA + ++ + TV D RF KPLD DL++++A H++L+TVEE ++ GG GS V L L L P + + LPD +I HGSP + + L + + A + + L Sbjct: 460 MLYTGYCYDAGPSAVRYPRGSATGATQV--EAMTALPIGKGVIKRLGKRIAMLNFGTT-----LAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGV---LELLQKLKMPKPVLQIGLPDEFIKHGSPEEVTHDLQLDAEGMLAQINAFL 620 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |