CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHELP (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.123e-21
Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    ++ P+  R+PRG+  G   P     T  EIGKG I  EG ++AIL +G+ +     AA  L +     T+AD RF KPLD +L++QLA  H++L+TVEE ++ GG GS V   L L   L  P+ + ++ LPD +I HG   + L E  L    I A + + L
Sbjct:  460 MLYTGYCYNEGPTAIRYPRGSATGE--PQVETMTAYEIGKGLIKREGKKIAILNFGTTLASASQAAEALDA-----TLADMRFVKPLDVELVKQLATSHDLLVTVEENAIMGGAGSGV---LELLQQLKLPMPVLNIGLPDEFIKHGECGEILAELQLDGPGIEAQIRAYL 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEB9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS195) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.123e-21
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = -1
Query:  250 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 765
            M+ T    D  PS  R+PRG+  GA+       T L IGKG I   G R+AIL +G+++   + AA     + +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+ V   L     L  P  +  + LPD +I HGSP +   +  L +  I A + + L +
Sbjct:  460 MLYTGYCYDAGPSAVRYPRGSATGAMQV--EAMTALPIGKGVIKRVGKRIAILNFGTLLASALTAA-----ESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGAGVLEQLQK---LRMPKAVLQIGLPDEFIKHGSPEEVTHDLQLDAEGILAQINAYLAQ 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.123e-21
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G       + T + +GKG +       EG RVAIL +G++V   + AA     +++  TVA+ RF KP+D  L+R+LA  H+ ++TVEEG V GG GS     L  SG++   L+L    LPD +IDHG PA  L + GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATV--KEFTEIPLGKGEVRRRTSQPEGKRVAILAFGTMVAPSLAAA-----EELDATVANMRFVKPVDAALVRELAETHDYVVTVEEGCVMGGAGSACVEALMESGVIRPVLQLG---LPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HALOH (1-deoxy-D-xylulose-5-phosphate synthase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  328 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 768
            HM+ TA + +D+P   R+PRG G G  L  +N  + + IGKG +L +G  V I+  GS V   + AA +L  Q I   V +ARF KPLD +LI    NE + +ITVEE ++ GGFGS +  F+  + +    +K++ + LPDR++ HG
Sbjct:  456 HMIYTA-INNDQPVAIRYPRGEGYGVEL--DNDFSTIPIGKGELLCDGKDVLIIAVGSRVYPAMEAARVLSQQGIKAAVINARFIKPLDKNLILNKINECKKVITVEEHALKGGFGSAILEFINENDLRG--IKVKRLGLPDRFLPHG 598          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G          PL  GKG +  +     G R+AIL +G++V   + AA  L +     TVA+ RF KP+D  L+R+LA  H+ ++TVEEG V GG GS     +  SG++   L+L    LPDR+IDHG PA  L   GL +  I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATVKQMAALPL--GKGEVRRQSTQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPIDAALVRELAETHDAVVTVEEGCVMGGAGSACVEAMMESGVIRPVLQLG---LPDRFIDHGDPAKLLASCGLDAAGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AZOSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcus sp. (strain BH72) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 68/162 (41.98%), Postives = 89/162 (54.94%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            AV  D P+  R+PRG G G V+P     T L IGKG I   G R+A+L +GS+     L   +   + +  +VA+ RF KPLD  LI +LA  H +L+TVEE +V GG GS V  F  +  +   P  LR + LPDR+IDHG  A  L   GL    I A +
Sbjct:  460 AVCHDGPTAVRYPRGGGSG-VVPLEPM-TALPIGKGEIRRHGTRIAVLAFGSM-----LGVALEVGEALDASVANMRFVKPLDEALIAELAANHALLVTVEENAVIGGAGSEVARF--VDTLPQRPRVLR-LGLPDRFIDHGDQAQLLASVGLDKTGILAAI 611          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS1_GEOSL (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter sulfurreducens GN=dxs1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.061e-20
Identity = 67/182 (36.81%), Postives = 97/182 (53.30%), Query Frame = -1
Query:  235 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGRPKEAL 768
            HM+ TA V  D P   R+PRG G G  +P + +   + IG G IL EGD VAI+  G  V   + AA  L  + I  TV +ARF KPLD ++I Q A     +IT EE ++ GGFGS V   L   G+    ++++ + +PDR+++ G       + G+ +  I+A     L+  G P  AL
Sbjct:  457 HMLKTA-VSHDGPIALRYPRGAGCG--IPLDQELREIPIGTGEILAEGDDVAIIAIGITVLPALEAARTLAEKGIRATVINARFVKPLDREMILQAARRTGCIITAEENALQGGFGSAVLELLADEGMTG--VRVKRLGIPDRFVEQGPQPQLRADLGIDAAGIAAATEAFLAAKGAPAPAL 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = -1
Query:  265 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 738
            D P+  R PRG+G G  L      T L IG+G +L EGD + I+ YGS+V   +  A +L+   +S TV +ARF +PLD  LI  LA     ++T+EEG++ GGFG+ V   LT   I    L++    +PD+ +DH +P    E  GL+   ++  +L
Sbjct:  468 DGPTALRIPRGSGEGVPLMEEGWET-LPIGRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAVLESLTDQDINVSMLRIG---IPDKLVDHATPQQSKEALGLTPAQMAERIL 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 59/172 (34.30%), Postives = 101/172 (58.72%), Query Frame = -1
Query:  256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768
            HM+ TA V   +P+  R+PRG+G+G  +  +++   LE+GKG +L EG  +AIL  G  V   + AA  L+ + I  TV +ARF KPLD +L+ ++    + ++TVEE  + GGFGS +  FL  + I    ++++ + + D + +  + A+Q    G+  + I+A V S++
Sbjct:  472 HMLHTA-VACGKPAAVRYPRGSGVGVTM--DSQPFSLELGKGEVLCEGGSLAILAVGDPVHPALTAAVQLREEGIYATVVNARFVKPLDRELLLRIVRSFKKILTVEENVLTGGFGSAILEFLEENDI--HGIQVKRLGIRDEFAEQATQAEQRRLYGIDEQGIAAAVRSMM 638          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHESR (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-7) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    D  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS V   L L   L  P  +  + LPD +I HGSP +   +  L +  + A + + L
Sbjct:  460 MLYTGYCYDAGPSAVRYPRGSATGATQV--EAMTALPIGKGVIKRLGKRIAMLNFGTT-----LAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGV---LELLQKLKMPKPVLQIGLPDEFIKHGSPEEVTHDLQLDAEGMLAQINAFL 620          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_SHELP8.123e-2138.011-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB98.123e-2136.991-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_BURCJ8.123e-2138.321-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_HALOH1.061e-2040.541-deoxy-D-xylulose-5-phosphate synthase OS=Halothe... [more]
DXS_BURP81.061e-2038.321-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_AZOSB1.061e-2041.981-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcu... [more]
DXS1_GEOSL1.061e-2036.811-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geoba... [more]
DXS_SYNSC1.386e-2037.741-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNAS1.386e-2034.301-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_SHESR1.386e-2037.431-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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