CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    D  PS  R+PRG+  GA        T L IGKG I   G R+A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS V   L L   L  P  +  + LPD +I HGSP +   +  L +  + A + + L
Sbjct:  460 MLYTGYCYDAGPSAVRYPRGSATGATQV--EAMTALPIGKGVIKRLGKRIAMLNFGTT-----LAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGV---LELLQKLKMPKPVLQIGLPDEFIKHGSPEEVTHDLQLDAEGMLAQINAFL 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PELLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 68/174 (39.08%), Postives = 91/174 (52.30%), Query Frame = -1
Query:  247 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 765
            M+ TA    + P   R+PRG+  G   P     T LE G+GRI+ EG    +   GS+VQ  V AA +L+++ I   + D RF KPLDT LI +LA     ++T+EE S+ GG GS V   L  S      LK+    LPDR+I HGS  D   E+GL +  I+  V      P
Sbjct:  462 MLHTALYHIEGPVAIRYPRGSSGGG--PLRKDFTRLEPGRGRIIREGTGPVLFAIGSMVQAAVEAAALLEAEGIKPDIVDMRFLKPLDTALIDRLAASATHIVTIEENSILGGLGSAVSDHLASSPKKTPLLKIG---LPDRFITHGSMQDLYRETGLDAAGIAEHVKEFYRTP 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DEHSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain BAV1) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 60/177 (33.90%), Postives = 100/177 (56.50%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            H++ TA V   +P   R+PRG G G  +  +    P  IG+  IL+ G  VAIL  G  V     A  +L    I  T+ + R+  PLD++L+ ++A  H+ L+TVEE  + GG GS +   L  +G+++  +K+ ++ +PD++++HG+ +    + GL  + I+  VLSL+G P E
Sbjct:  452 HLLYTA-VNSGKPFALRYPRGFGEGVEIESSLHNIP--IGQNEILVNGSDVAILATGKSVAFAREALEILTESGIKPTLVNNRYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVN-KIKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THIDA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 66/164 (40.24%), Postives = 90/164 (54.88%), Query Frame = -1
Query:  268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756
            + A + D P+  R+PRG G GA +    +  P+EIGKG     G  VA+L +GS+V   + AA  L +     TVAD RF KPLD DL+ +LA  H +L+T+EE +V GG G+ V   L   GI+   L+L    L D +I+HG  A  L   GL +  I   V
Sbjct:  456 STAFLHDGPAAVRYPRGCGTGAAIEPGLE--PVEIGKGVCRRRGRDVALLAFGSLVAPALTAAERLDA-----TVADMRFVKPLDVDLVGELAAGHRLLVTLEENAVAGGAGAAVAELLAQLGIVVPVLQLG---LSDVFIEHGDAAAMLAACGLDAPGIERAV 609          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG+  GA        T L IGKG I  +G ++AIL +G+      LA +++ ++    TVAD RF KPLD DLI++LA  H++L+TVEE ++ GG GS V   L L   L  P  +  + LPD +I HG+P + + E  L +  I   +   L
Sbjct:  471 PTAVRYPRGSATGAKQVETM--TALPIGKGLIKRQGQKIAILNFGTT-----LANSLVAAEAFDATVADMRFVKPLDVDLIKELAETHDVLVTVEENAIMGGAGSGV---LELLQTLKLPKPVLQIGLPDEFIKHGAPDEIISELRLDAAGIEKQIADYL 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEDO (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T     D P+  R+PRG   GA      + T L IGKGR+  +G ++AIL +G+      LA+ +  ++ +  +VAD RF KPLD DL+  LA EH++++T+EE ++ GG GS V   L    I    L++    LPD +I HG+P + + E  L S+ I A +   L
Sbjct:  460 MLYTGYRYQDGPTAVRYPRGFATGA--EQIEQMTALPIGKGRVCRQGKKIAILNFGTT-----LASALEVAEQLDASVADMRFIKPLDVDLLHTLALEHDVIVTIEENAIMGGAGSGVIEALHKLKICKPVLQIG---LPDEFIKHGAPDEIIAELRLDSKGILAQIQEYL 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_POLSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 69/196 (35.20%), Postives = 102/196 (52.04%), Query Frame = -1
Query:  172 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI*VIIQNQTTSCPSDPTYNS 756
            ++A   + P   R+PRG G G       +  PL  GKG I  EG  VAIL +G+++   + AA  L      VTV + R+ KPLDT+L+ ++A  HE L+T+EEG++ GG GS V   L  +G+    L+L    L D +I+HG PA  L   GL +  I A V++  G          ++Q + +  P+ P   S
Sbjct:  457 SSAFEQNHPVAVRYPRGAGAGVEPEPGLQ--PLPFGKGEIRREGSGVAILAFGTLLYPALQAAEKL-----GVTVVNMRWAKPLDTELLLKVAASHEALVTLEEGAIMGGAGSAVGEALQAAGLGKPLLQLG---LKDEFIEHGDPAKLLALQGLDAAGIEAAVMARFGS---------VLQPEKSGKPAKPALKS 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  289 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 768
            H+V TA   +D P   R+PRGNG+G  +P +++   + IG    L EG + AI+ +G+ +   + AA  L    +SV V +ARF KP+D   +  L  ++  ++T+EE   +GGFGS V  F    G       +  M +PD +I+HGS    LEE GL++
Sbjct:  456 HLVYTAMQYEDGPIALRYPRGNGLG--VPMDDEFKVIPIGTWETLREGTQAAIVTFGTTIPMAMEAAERLGKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGSGVMEFAAEHGYHSA--LIERMGIPDYFIEHGSVTKLLEEIGLTT 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHESH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = -1
Query:  280 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 765
            M+ T     + P+  R+PRG+  G   P   +   L IGKG I  +G +VAIL +G+++   + AA     + I  TVAD RF KPLD +L+++LA+ H++L+TVEE ++ GG GS V   L L   L  P+ +  + LPD +I HG+  + L E  L +  I
Sbjct:  460 MLYTGYCYREGPTAVRYPRGSATGE--PQVEEMQALPIGKGLIKRQGQKVAILNFGTLLADVLTAA-----ESIDATVADMRFVKPLDVELVKELASSHDLLVTVEENAIMGGAGSGV---LELLQQLKQPMPVLQIGLPDEFIKHGASGEILAELRLDAAGI 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A + D PS  R+PRG G GA +  + +  P  IGKG +  +G  VAIL +GS++   + AA  L +     TVA+ RF KPLD +LI QLA+ H +++TVEE +V GG G+ V   +  + I    L L    LPD +I+HG     L E GL++  I A +
Sbjct:  457 AYLHDGPSAVRYPRGGGPGATITRDMQLLP--IGKGELRRQGSWVAILAFGSMLAPALEAAETLDA-----TVANMRFVKPLDANLINQLASSHTLIVTVEENAVMGGAGAAVMECMQAADIHTPVLCLG---LPDMFIEHGVHETMLAECGLNAAGIIAAI 608          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_SHESM1.386e-2037.431-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PELLD1.386e-2039.081-deoxy-D-xylulose-5-phosphate synthase OS=Pelodic... [more]
DXS_DEHSB1.386e-2033.901-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_THIDA1.810e-2040.241-deoxy-D-xylulose-5-phosphate synthase OS=Thiobac... [more]
DXS_SHEPW1.810e-2038.751-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEDO1.810e-2036.841-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_POLSJ1.810e-2035.201-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_BACCN1.810e-2036.021-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_SHESH2.364e-2038.041-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_METFK2.364e-2040.121-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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