CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R PRG+G G  +P  ++G  PL IG+G +L EGD + I+ YG +V   ++ A +L+   I  TV +ARF +PLD  LI  LA     ++T+EEG++ GGFG+ V   L+   +L    ++    +PD+ +DH SP    E  GL+   +S  +
Sbjct:  470 PAALRIPRGSGEG--VPLLDEGWKPLAIGRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGIKATVINARFLRPLDQALIHPLARRIGSVVTMEEGALAGGFGAAVVESLSDQDVLVPTFRIG---IPDQLVDHASPQQSREALGLTPTQMSERI 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAHCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 59/156 (37.82%), Postives = 91/156 (58.33%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG GA +    +   LEIGK  +   G +  IL +G++     L A +  +++ + TV D RF KPLD ++I ++A  H++L+T+EE  + GG GS V  FL   GI    L+L    LPD +I+HG PA+  +E GL ++ I+  +
Sbjct:  480 PAAVRYPRGNGPGADISPGLES--LEIGKANLRRRGAQTVILNFGAL-----LPAALGVAEESNFTVVDMRFIKPLDQNMILEMAGSHDLLVTLEENCILGGAGSGVIEFLASQGIAMPVLQLG---LPDEFIEHGKPAELHKEVGLDAQGIANAI 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus halodurans GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 62/177 (35.03%), Postives = 96/177 (54.24%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            HMV TA   +  P   R+PRGNG G  +    K  P  IG   +L EG    IL +G+++     A+  L  Q  S+ + +AR  KPLD  ++ ++A     ++T+EE +V G FGS V  F    G  +  +  + M +PDR+I+HGS ++ LEE GL+S  ++  +  LL R ++
Sbjct:  455 HMVYTAIQYEGGPIAVRYPRGNGYGIKMDEVLKEIP--IGSWEVLQEGTDACILTFGTMIPVAEQASKELSQQGYSIRLINARSVKPLDEAMLHEIAKSGRPVLTLEETAVQGSFGSAVLEFFHDHGYHN--VVTQRMGIPDRFIEHGSVSELLEEIGLTSSQVANQLSKLLPRKQK 627          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAEIG (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain PittGG) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.265e-20
Identity = 59/166 (35.54%), Postives = 94/166 (56.63%), Query Frame = -1
Query:  250 RPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 735
            +P+  R+PRGN +G  L      TPLE   IGK R++ EG ++AIL +G++     L + +  S+ ++ TV D RF KP+D ++I  LA  H+ L+T+EE ++ GG GS V   L  SG     L+L    LPD +I   +  + L + GL ++ I   +L+ + +
Sbjct:  470 KPAAVRYPRGNAVGVKL------TPLEMLPIGKSRLIREGQKIAILNFGTL-----LPSALELSEKLNATVVDMRFVKPIDIEMINMLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSGKSTALLQLG---LPDYFIPQATQQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain AS9601) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 53/147 (36.05%), Postives = 87/147 (59.18%), Query Frame = -1
Query:  295 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 732
            P+  R PRG+G+G  +  +    P+ IG+  IL EG+ + I+ YGS+V   +  A +LK+ +I+  + +ARF KPLD +LI  LA+  + ++T+EEG+ +GGFGS +      + I    + +  + +PD  +DH SP    E+ GL
Sbjct:  470 PTALRIPRGSGLGVAV-MDEGWEPMNIGEAEILEEGEDILIIAYGSMVASAIETAKILKNMNINACIVNARFVKPLDKNLIMPLASRIQKVVTMEEGTLIGGFGSAIVELFNDNEI---NIPVYRIGIPDVLVDHASPDQSKEKLGL 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 57/157 (36.31%), Postives = 90/157 (57.32%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R PRG+G G  +P  ++G  PL IG+G +L EGD + I+ YG +V   ++ A +L+   +  TV +ARF +PLD  LI  LA     ++T+EEG++ GGFG+ V   L+   +L    ++    +PD+ +DH SP    E  GL+   +S  +
Sbjct:  470 PAALRIPRGSGEG--VPLLDEGWEPLAIGRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGVKATVINARFLRPLDQALIHPLARRIGRVVTMEEGALAGGFGAAVVESLSDQDVLVPTFRIG---IPDQLVDHASPQQSREALGLTPTQMSERI 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROM2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = -1
Query:  265 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 732
            P+  R PRG+G+G  +  +    PL IG+  IL EG+ + I+ YGS+V   +  A +LK+++I+  + +ARF KPLD  LI  LA+  + ++T+EEG+ +GGFGS +      + I    + +  + +PD  +DH SP    E+ GL    ++  ++
Sbjct:  470 PTALRIPRGSGLGVAV-MDEGWEPLNIGEAEILEEGNDILIIAYGSMVASALETAELLKAKNINSCIVNARFVKPLDKKLIMPLASRIQKVVTMEEGTLIGGFGSAIVELFNDNEI---NIPVYRIGIPDVLVDHASPDQSKEKLGLMPNQMADNII 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_POLNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 65/169 (38.46%), Postives = 90/169 (53.25%), Query Frame = -1
Query:  253 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 756
            T A   D P   R+PRG G G       K  P   GKG I  EG  +AIL +G+++   + AA  L       TV + R+ KPLDT+L+ ++A  HE+L+T+EEG++ GG GS V   L  +G++   L+L    L D +I+HG  A  L   GL +  I A V S  G
Sbjct:  461 TTAFEQDSPVAVRYPRGAGAGVEPEAGLKSLPF--GKGEIRREGSGIAILAFGTLLYPALQAAEKL-----GATVVNMRWAKPLDTELLLKVAAGHEVLVTLEEGAIMGGAGSAVGEALQAAGVVKPLLQLG---LKDEFIEHGEVAVLLALQGLDAAGIEAAVRSRFG 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH7803) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  244 PSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 732
            P   R PRG G G  +P   +G  PL IG+G +L +GD + I+ YG++  + +  A++L S  +  TV +ARF +PLD +L+  LA     ++T+EEG++ GGFGS +   L  + I    L+L    +PD  +DH +P    E+ GL+   ++ ++   L R K
Sbjct:  470 PCAIRIPRGPGEG--VPLMEEGWEPLPIGRGEVLRDGDDLLIVAYGAMNSKALATADLLASCGVQSTVVNARFLRPLDDELLHPLARRIGKVVTIEEGTLAGGFGSALTESLLDADIKPSILRLG---IPDVLVDHATPQQSFEKLGLTPAQMAESIQGFLQRSK 629          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHESA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain ANA-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    D  PS  R+PRG+  GA        T L IGKG I   G  +A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS V   L L   L  P  +  + LPD +I HGSP +   +  L +  + A + + L
Sbjct:  460 MLYTGYCYDAGPSAVRYPRGSATGATQV--EAMTALPIGKGVIKRLGKGIAMLNFGTT-----LAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGV---LELLQKLKMPKPVLQIGLPDEFIKHGSPEEVTHDLQLDAEGMLAQINAFL 620          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_PROMM4.032e-2036.941-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_HAHCH4.032e-2037.821-deoxy-D-xylulose-5-phosphate synthase OS=Hahella... [more]
DXS_BACHD4.032e-2035.031-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_HAEIG5.265e-2035.541-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_PROMS6.877e-2036.051-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PROM36.877e-2036.311-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PROM26.877e-2034.391-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_POLNA6.877e-2038.461-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_SYNPW8.981e-2035.151-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHESA8.981e-2036.841-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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