CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAEIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.613e-19
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = -1
Query:  250 RPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 735
            +P+  R+PRGN +G  L      TPLE   IGK R++ +G ++AIL +G++     L + +  S+ ++ TV D RF KP+D ++I  LA  H+ L+T+EE ++ GG GS V   L  SG     L+L    LPD +I   +  + L + GL ++ I   +L+ + +
Sbjct:  470 KPAAVRYPRGNAVGVKL------TPLEMLPIGKSRLIRKGQKIAILNFGTL-----LPSALELSEKLNATVVDMRFVKPIDIEMINVLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSGKSTALLQLG---LPDYFIPQATQQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAEIE (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain PittEE) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.613e-19
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = -1
Query:  250 RPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 735
            +P+  R+PRGN +G  L      TPLE   IGK R++ +G ++AIL +G++     L + +  S+ ++ TV D RF KP+D ++I  LA  H+ L+T+EE ++ GG GS V   L  SG     L+L    LPD +I   +  + L + GL ++ I   +L+ + +
Sbjct:  470 KPAAVRYPRGNAVGVKL------TPLEMLPIGKSRLIRKGQKIAILNFGTL-----LPSALELSEKLNATVVDMRFVKPIDIEMINVLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSGKSTALLQLG---LPDYFIPQATQQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ENTS8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.613e-19
Identity = 62/167 (37.13%), Postives = 90/167 (53.89%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T    +D PS  R+PRGN +G  L    K   L IGKG +   G++VA+L +G+++ +   AA  L +     T+ D RF KPLD  LI +LA  HE L+T+EE +V GG GS V   L        P+ + ++ LPD +I  G+  +   E GL++  I   V
Sbjct:  460 MLFTGYHYNDGPSAVRYPRGNALGVTLEPLQK---LPIGKGVVKRHGEKVALLNFGTLLPEATQAAEALNA-----TLVDMRFVKPLDEALIMELAGRHEALVTIEENAVMGGAGSGVNEVLMAK---RKPVPVLNIGLPDHFIPQGTQDEARAEIGLTASGIEQRV 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_YERE8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG GAVL        + IGKG +  EG++VAIL +G+++ Q  + A+     +++ T+ D RF KPLD +L+ +LA  HE+L+TVEE ++ GG GS V   L     L   L L    LPD ++  G   +   E GL +  I + +
Sbjct:  470 PAAVRYPRGNGTGAVLEPL---AIMPIGKGIVRREGEKVAILCFGTLLAQAQIVAD-----NLNATLVDMRFVKPLDEELVLELAASHEVLVTVEENAIMGGAGSGVNELLMAKRQLVSVLNLG---LPDHFVPQGEQDEMRAEFGLDAAGIQSQI 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNPX (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH8102) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  307 DRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLE 738
            D P+  R PRG+G+G  +P   +G   L IG+G +L EGD + I+ YGS+V   +  A +L+   +S TV +ARF +PLD  LI  LA     ++T+EEG++ GGFG+ V   L+   I    + L  + +PD+ +DH +P    E
Sbjct:  468 DGPTALRIPRGSGVG--MPLMEEGWEALPIGRGELLREGDDLLIVAYGSMVHPALDTATLLEEAGLSTTVINARFLRPLDQALIHPLARRIRRVVTMEEGALAGGFGAAVLESLSDQDI---SIPLLRIGIPDKMVDHATPQQSKE 608          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEFN (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 60/171 (35.09%), Postives = 94/171 (54.97%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T     D P+  R+PRG   GA     +  T + IGKG +  +G ++AI+ +G+ ++    AA  L +     T+AD RF KPLD  L+ QLAN H++++TVEE ++ GG GS V   L    I+   L++    LPD +I HG+P +   E  L ++ I A + + +
Sbjct:  460 MLYTGYCYQDGPTAVRYPRGFATGA--EQIDTMTMIPIGKGVLTRQGQKIAIVNFGTTLEAATDAAEKLDA-----TIADMRFVKPLDLGLLEQLANSHDVIVTVEENAIMGGAGSGVIEALHKMRIVKPVLQIG---LPDEFIKHGAPDEITAELQLDAQGILAQIQAFM 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 52/147 (35.37%), Postives = 86/147 (58.50%), Query Frame = -1
Query:  295 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 732
            P+  R PRG+G+G  +  +    PL IG+  I+  G+ + I+ YGS+V   +  A +LK+ +I+  + +ARF KPLD +LI  LA+  + ++T+EEG+ +GGFGS +      + I    + +  + +PD  +DH SP    E+ GL
Sbjct:  470 PTALRIPRGSGLGVAI-MDEGWEPLNIGEAEIIEGGEDILIIAYGSMVASAIETAKILKNMNINACIVNARFVKPLDKNLIMPLASRIQKVVTMEEGTLIGGFGSAIVELFNDNEI---NIPVYRIGIPDVLVDHASPDQSKEKLGL 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAEI8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain 86-028NP) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = -1
Query:  250 RPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 735
            +P+  R+PRGN +G  L      TPLE   IGK R++ +G ++AIL +G++     L + +  S+ ++ TV D RF KP+D ++I  LA  H+ L+T+EE ++ GG GS V   L  SG     L+L    LPD +I   +  + L + GL ++ I   +L+ + +
Sbjct:  470 KPAAVRYPRGNAVGVKL------TPLEMLPIGKSRLIRKGQKIAILNFGTL-----LPSALELSEKLNATVVDMRFVKPIDIEMINVLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSGKSTALLQLG---LPDYFIPQATRQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G         T + +GKG +       +G R+AIL +G++V   + AA+ L +     TVA+ RF KP+D +L++ LA  H+ L+TVEEG V GG GS     +  SG +   L+L    LPDR++DHG PA  L   GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATV--KAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQLG---LPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G         T + +GKG +       +G R+AIL +G++V   + AA+ L +     TVA+ RF KP+D +L++ LA  H+ L+TVEEG V GG GS     +  SG +   L+L    LPDR++DHG PA  L   GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATV--KAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQLG---LPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_HAEIN2.613e-1934.941-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_HAEIE2.613e-1934.941-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_ENTS82.613e-1937.131-deoxy-D-xylulose-5-phosphate synthase OS=Enterob... [more]
DXS_YERE83.413e-1937.821-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_SYNPX3.413e-1938.361-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHEFN3.413e-1935.091-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PROM03.413e-1935.371-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_HAEI83.413e-1934.941-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_BURPS3.413e-1937.131-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP13.413e-1937.131-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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