CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G         T + +GKG +       +G R+AIL +G++V   + AA+ L +     TVA+ RF KP+D +L++ LA  H+ L+TVEEG V GG GS     +  SG +   L+L    LPDR++DHG PA  L   GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATV--KAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQLG---LPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G         T + +GKG +       +G R+AIL +G++V   + AA+ L +     TVA+ RF KP+D +L++ LA  H+ L+TVEEG V GG GS     +  SG +   L+L    LPDR++DHG PA  L   GL    I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATV--KAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQLG---LPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.457e-19
Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = -1
Query:  262 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 768
            HM+ TA V  + P   R+PRG G G  L  +    P  IG+  +L EGD + ++  G++V   V AA +L  + I  +V +ARF KPLD   I   A     LIT+EE  + GGFGS V   L   G+ D  ++++ + LPD +I+HG+P     + GL+   +  T  S
Sbjct:  454 HMLKTA-VEHEGPIAVRYPRGTGTGCALDQDLVALP--IGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLTD--VRVQLIGLPDVFIEHGAPHLLRAKYGLTVDRVVRTAES 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_STRMK (1-deoxy-D-xylulose-5-phosphate synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  265 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 732
            P+  R+PRG G G     +    P  IGKG + ++G R+A+L +GS V     AA     +++ ++V + RF KPLD +L+  +A +HE L+T+E+  V GG GS V   L   G+L   L L    LPD Y  H S  D L E+G+ +  I A VL
Sbjct:  472 PAAVRYPRGTGTGVAAGTDLSTLP--IGKGELRLQGSRIALLAFGSTV-----AAAEQVGRELGLSVVNMRFIKPLDRELVLAVAAQHEGLVTIEDNVVAGGAGSGVGELLNAEGVLRPILHLG---LPDSYQHHASREDLLAEAGIDAAGIRAAVL 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ALTMD (1-deoxy-D-xylulose-5-phosphate synthase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19
Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = -1
Query:  253 RPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 735
            +P+  R+PRG G+G     +   T LEIGK R   E      + VAIL +G     C+L   +  +  I  TV D RF KPLD D + + ANEH  LIT+E+G + GG GS V   L  +G+L     ++ + LPD +I  G+  +  +E GL +  I A   SL+G
Sbjct:  469 KPAAVRYPRGAGMGVT--PDEAMTALEIGKSRTCRETAKDKSESVAILNFG-----CLLPYALEAAVAIDATVIDMRFIKPLDGDAVLKAANEHSALITLEDGCIMGGAGSAVLEHLQQNGVLKA---VKMLGLPDSFILQGTQQEMYKEHGLDAEGIIAAAKSLIG 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PELCD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P  +R+PRG  +G  LP + +  P  IGKG  L +G    I   G V ++ ++A+++L  + +SV V D RF KPLD  L+   A    +++TVEE    GGFGS V   L   G+    +++  + LPDR+I+ G+        GL +  I+A+V + +
Sbjct:  465 DGPLAYRYPRGKALGLELPDSVESMP--IGKGEKLRDGSDAVIFALGVVCKEALVASDILAGEGLSVAVVDPRFLKPLDQQLLIAEARRTGVVVTVEENVRQGGFGSAVLEMLADEGL---AVRVLRIGLPDRFIEQGTQQQLYARYGLDAEGIAASVRNFM 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LISW6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19
Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = -1
Query:  241 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 765
            ++ TA   D  P   R+PRGNG+G  L  +N  T + IG+   +++     I+ +G  +Q  + AA+ L+++   V V +ARF KPLD  L+ Q+  +   ++TVEE  + GGFG+ V  F+  +   D  + +  + LPD +I HGS    LE  G+S   I   +  +L + ++
Sbjct:  457 LMVTAFDYDAGPFAIRYPRGNGLGVELTESN--TLIPIGEWETIIQPIDAVIVTFGPTIQLALKAADQLETEGYRVGVINARFIKPLDETLLHQMIKQKIPILTVEESLLKGGFGASVLEFIETNNYTD--VAIHRIGLPDEFISHGSVPVILESYGISEAGIELKIKEMLAQSEK 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEA6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = -1
Query:  250 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 738
            ++P+  R+PRG+G G  +  +N    LEIGK R + +G++VAIL +G ++     AA +L +     TV D RF KPLDT+ +  +A  HE+LIT+E+G + GG G  V  +L LS +     +L  + LPD +I  G+  +   E G+    I A   + L +
Sbjct:  468 NKPAAVRYPRGSGTG--VKPDNTMQALEIGKSRTIRQGEKVAILNFGVLLPYAEKAAEVLNA-----TVIDMRFVKPLDTEAVANVAKNHELLITLEDGATTGGAGGAVAEYL-LSTVHTS--RLLQIGLPDEFIMQGTQTEMYAEIGMDDAGIIAKAHTFLAQ 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_GLOVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Gloeobacter violaceus GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T       P   R+PRG+G GA L       P+ IGK  +L  GD + I+  G++V   + AA +L    I  TV +ARF KPLDT+L+  LA     ++TVEEG  +GGFGS V   L   GI    L++    + D+++ H   +  L+  GL+   I+ T+
Sbjct:  462 MMVTGIQYTKGPIAVRYPRGSGSGAPLMAEG-WDPVPIGKAEVLRSGDDLLIVAIGTMVHPSLQAAALLSEHGIDATVVNARFAKPLDTELLLPLARRIGRVVTVEEGCRMGGFGSAVLEALMDGGIAVPTLRIG---IDDKFVTHAGRSQLLDLLGLTPSGIAKTI 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ALISL (1-deoxy-D-xylulose-5-phosphate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            PS  R+PRG+  G  +  N +   LEIGKGR++ E      G+RVAIL +G+ +   V AA  L +     TVAD RF KPLD  L+ +L   H++L+T+EE ++ GG GS V  FL  + ++   L+L    LPD++I  G+  +   E  L +  I   +   L
Sbjct:  470 PSAVRYPRGSATG--IEVNKEMQALEIGKGRLIRETKITEKGERVAILNFGTFLSNSVEAAEKLDA-----TVADMRFAKPLDETLLCELVTSHDVLVTIEENAISGGAGSGVIEFLMKNRLIKPVLQLG---LPDQFIAQGTQEEMHAELMLDATGIEKQIRDYL 625          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_BURP03.413e-1937.131-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURMA3.413e-1937.131-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_DESAP4.457e-1936.471-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_STRMK5.822e-1938.221-deoxy-D-xylulose-5-phosphate synthase OS=Stenotr... [more]
DXS_ALTMD5.822e-1937.721-deoxy-D-xylulose-5-phosphate synthase OS=Alterom... [more]
DXS_PELCD7.603e-1934.571-deoxy-D-xylulose-5-phosphate synthase OS=Pelobac... [more]
DXS_LISW67.603e-1932.391-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_PSEA69.930e-1935.981-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoa... [more]
DXS_GLOVI9.930e-1935.931-deoxy-D-xylulose-5-phosphate synthase OS=Gloeoba... [more]
DXS_ALISL9.930e-1937.351-deoxy-D-xylulose-5-phosphate synthase OS=Aliivib... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
back to top