CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19 Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A+ P+ R+PRG G G T + +GKG + +G R+AIL +G++V + AA+ L + TVA+ RF KP+D +L++ LA H+ L+TVEEG V GG GS + SG + L+L LPDR++DHG PA L GL I+ ++ Sbjct: 459 ALQQPNPTAVRYPRGAGTGVATV--KAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQLG---LPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19 Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM-----EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A+ P+ R+PRG G G T + +GKG + +G R+AIL +G++V + AA+ L + TVA+ RF KP+D +L++ LA H+ L+TVEEG V GG GS + SG + L+L LPDR++DHG PA L GL I+ ++ Sbjct: 459 ALQQPNPTAVRYPRGAGTGVATV--KAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQLG---LPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.457e-19 Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = -1 Query: 262 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 768 HM+ TA V + P R+PRG G G L + P IG+ +L EGD + ++ G++V V AA +L + I +V +ARF KPLD I A LIT+EE + GGFGS V L G+ D ++++ + LPD +I+HG+P + GL+ + T S Sbjct: 454 HMLKTA-VEHEGPIAVRYPRGTGTGCALDQDLVALP--IGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLTD--VRVQLIGLPDVFIEHGAPHLLRAKYGLTVDRVVRTAES 618
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_STRMK (1-deoxy-D-xylulose-5-phosphate synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19 Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = -1 Query: 265 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 732 P+ R+PRG G G + P IGKG + ++G R+A+L +GS V AA +++ ++V + RF KPLD +L+ +A +HE L+T+E+ V GG GS V L G+L L L LPD Y H S D L E+G+ + I A VL Sbjct: 472 PAAVRYPRGTGTGVAAGTDLSTLP--IGKGELRLQGSRIALLAFGSTV-----AAAEQVGRELGLSVVNMRFIKPLDRELVLAVAAQHEGLVTIEDNVVAGGAGSGVGELLNAEGVLRPILHLG---LPDSYQHHASREDLLAEAGIDAAGIRAAVL 618
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ALTMD (1-deoxy-D-xylulose-5-phosphate synthase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19 Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = -1 Query: 253 RPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 735 +P+ R+PRG G+G + T LEIGK R E + VAIL +G C+L + + I TV D RF KPLD D + + ANEH LIT+E+G + GG GS V L +G+L ++ + LPD +I G+ + +E GL + I A SL+G Sbjct: 469 KPAAVRYPRGAGMGVT--PDEAMTALEIGKSRTCRETAKDKSESVAILNFG-----CLLPYALEAAVAIDATVIDMRFIKPLDGDAVLKAANEHSALITLEDGCIMGGAGSAVLEHLQQNGVLKA---VKMLGLPDSFILQGTQQEMYKEHGLDAEGIIAAAKSLIG 625
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PELCD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dxs PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19 Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -1 Query: 256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738 D P +R+PRG +G LP + + P IGKG L +G I G V ++ ++A+++L + +SV V D RF KPLD L+ A +++TVEE GGFGS V L G+ +++ + LPDR+I+ G+ GL + I+A+V + + Sbjct: 465 DGPLAYRYPRGKALGLELPDSVESMP--IGKGEKLRDGSDAVIFALGVVCKEALVASDILAGEGLSVAVVDPRFLKPLDQQLLIAEARRTGVVVTVEENVRQGGFGSAVLEMLADEGL---AVRVLRIGLPDRFIEQGTQQQLYARYGLDAEGIAASVRNFM 621
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LISW6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dxs PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19 Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = -1 Query: 241 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 765 ++ TA D P R+PRGNG+G L +N T + IG+ +++ I+ +G +Q + AA+ L+++ V V +ARF KPLD L+ Q+ + ++TVEE + GGFG+ V F+ + D + + + LPD +I HGS LE G+S I + +L + ++ Sbjct: 457 LMVTAFDYDAGPFAIRYPRGNGLGVELTESN--TLIPIGEWETIIQPIDAVIVTFGPTIQLALKAADQLETEGYRVGVINARFIKPLDETLLHQMIKQKIPILTVEESLLKGGFGASVLEFIETNNYTD--VAIHRIGLPDEFISHGSVPVILESYGISEAGIELKIKEMLAQSEK 628
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEA6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dxs PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = -1 Query: 250 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 738 ++P+ R+PRG+G G + +N LEIGK R + +G++VAIL +G ++ AA +L + TV D RF KPLDT+ + +A HE+LIT+E+G + GG G V +L LS + +L + LPD +I G+ + E G+ I A + L + Sbjct: 468 NKPAAVRYPRGSGTG--VKPDNTMQALEIGKSRTIRQGEKVAILNFGVLLPYAEKAAEVLNA-----TVIDMRFVKPLDTEAVANVAKNHELLITLEDGATTGGAGGAVAEYL-LSTVHTS--RLLQIGLPDEFIMQGTQTEMYAEIGMDDAGIIAKAHTFLAQ 621
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_GLOVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Gloeobacter violaceus GN=dxs PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = -1 Query: 268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765 M+ T P R+PRG+G GA L P+ IGK +L GD + I+ G++V + AA +L I TV +ARF KPLDT+L+ LA ++TVEEG +GGFGS V L GI L++ + D+++ H + L+ GL+ I+ T+ Sbjct: 462 MMVTGIQYTKGPIAVRYPRGSGSGAPLMAEG-WDPVPIGKAEVLRSGDDLLIVAIGTMVHPSLQAAALLSEHGIDATVVNARFAKPLDTELLLPLARRIGRVVTVEEGCRMGGFGSAVLEALMDGGIAVPTLRIG---IDDKFVTHAGRSQLLDLLGLTPSGIAKTI 624
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ALISL (1-deoxy-D-xylulose-5-phosphate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=dxs PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = -1 Query: 256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732 PS R+PRG+ G + N + LEIGKGR++ E G+RVAIL +G+ + V AA L + TVAD RF KPLD L+ +L H++L+T+EE ++ GG GS V FL + ++ L+L LPD++I G+ + E L + I + L Sbjct: 470 PSAVRYPRGSATG--IEVNKEMQALEIGKGRLIRETKITEKGERVAILNFGTFLSNSVEAAEKLDA-----TVADMRFAKPLDETLLCELVTSHDVLVTIEENAISGGAGSGVIEFLMKNRLIKPVLQLG---LPDQFIAQGTQEEMHAELMLDATGIEKQIRDYL 625 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |