CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_GEOSL (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter sulfurreducens GN=dxs2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 58/175 (33.14%), Postives = 91/175 (52.00%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAI-LGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HM+ TA +  + P+  R+PRGNG+G  +P +    P+ +G   +L  G    + L  G++V   + AAN L+ + I +TV + RF KPLD +LI         L+T+EE  + GGFGS V   L   G+  G + +     PDRY++ G   +     GL +  I+  + +L  R
Sbjct:  457 HMLKTA-IDHNGPAAVRYPRGNGLG--VPLDQSLAPIPLGTSEVLRAGSGTCVVLAVGAMVGPALEAANTLEGEGIDLTVVNVRFVKPLDRELILSYVGRAGTLVTIEENVLQGGFGSAVLELLADEGV--GGVAVHRFGYPDRYVEQGEQHELRSRYGLDAEGIAGRIRTLSAR 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_YERPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG GAVL       PLE   IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L         + + ++ LPD ++  G   +   E GL +  I   +
Sbjct:  470 PAAVRYPRGNGTGAVLE------PLEMLPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELLMAKRRW---VPVLNIGLPDLFVPQGEQDEMRSELGLDAAGIQRQI 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_YERPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG GAVL       PLE   IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L         + + ++ LPD ++  G   +   E GL +  I   +
Sbjct:  470 PAAVRYPRGNGTGAVLE------PLEMLPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELLMAKRRW---VPVLNIGLPDLFVPQGEQDEMRSELGLDAAGIQRQI 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VEREI (1-deoxy-D-xylulose-5-phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = -1
Query:  268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756
            ++A   + P   R+PRG+G G        G P   GKG I  E         R+AIL +GS++   + AA+ L +     TV + R+ KPLD  L+RQ+A  H+ L+T+EEG++ GG GS V   L  +GIL   L+L    L D +I+HG PA  L   GL++  I A +
Sbjct:  460 SSAYAQNHPVAVRYPRGSGAGVAPLAGLDGLPF--GKGEIRRERQRQDSNAPRIAILAFGSLLYPALEAADALDA-----TVVNMRWAKPLDDALLRQVAEGHDALVTLEEGAIMGGAGSAVTETLNAAGILRPVLQLG---LADIFIEHGDPAKLLAMQGLNAAGIRAAI 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNS9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  253 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 738
            D P+  R PRG+G G +L        L IG+G +L EG+ + I+ YGS+V   +  A +L++  +S +V +ARF +PLD  LI  LA     ++T+EEG++ GGFG+ V   L    I    L++    +PD+ +DH +P    E  GL+   +S  +    G
Sbjct:  468 DGPTALRIPRGSGEGVLLMEEG-WEALPIGRGELLREGNDLVIVAYGSMVAPAMETAALLEASGLSASVINARFLRPLDQALIHPLARRVPRVVTMEEGTLSGGFGAAVLESLNDHDINVPVLRIG---IPDQLVDHATPQQSKEALGLTPNQMSLKIQQRFG 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHIDS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGTVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIG2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            D P+  R+PRG G GA  P ++    +EIGKG I  EG++ A + +GS+V   +  A  L +     TVAD RF KP+D +LI +LA  H+ ++T+EE +  GG G  V   L   GI    L L    + D   +HG P   L++ GLS+  +   V
Sbjct:  479 DAPAAVRYPRGTGTGA--PVSDGMETVEIGKGIIRREGEKTAFIAFGSMVAPALAVAEKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLLLG---VADTVTEHGDPKKLLDDLGLSAEAVERRV 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIG1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            D P+  R+PRG G GA  P ++    +EIGKG I  EG++ A + +GS+V   +  A  L +     TVAD RF KP+D +LI +LA  H+ ++T+EE +  GG G  V   L   GI    L L    + D   +HG P   L++ GLS+  +   V
Sbjct:  479 DAPAAVRYPRGTGTGA--PVSDGMETVEIGKGIIRREGEKTAFIAFGSMVATALAVAEKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLLLG---VADTVTEHGDPKKLLDDLGLSAEAVERRV 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAEPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = -1
Query:  259 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 765
            M+ TA  ++  P   R+PRGN  G  L        LEIGKG++L +G++VAIL +G+++ +    A     +  + T+ D RF KPLD  LI +LA+ HE+L+T+EE ++ GG GS V  +L   G +   L L    +PD +I   + A+   + GL ++ I   +LS+
Sbjct:  457 MLYTAYTMNS-PVAVRYPRGNAQGVELQPMQA---LEIGKGKVLKQGEKVAILNFGALLNEAKQVA-----ETHNYTLVDMRFAKPLDEALIAELADRHELLVTLEENALQGGAGSAVNEYLQHIGKIKPLLMLG---IPDFFIPQATQAESYADLGLDAKGIEQKILSM 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea psychrophila GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 59/163 (36.20%), Postives = 87/163 (53.37%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTP-LEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P+  R+PRG G         +  P LEIG+G +L EGD + +L  G+ V   + AA  L  Q IS +V + RF KPLD +LI Q A +   +IT+E+ ++  GFGS V   L+   +    +K + +  P  +++HG      E SG++SR I    L LL
Sbjct:  474 DGPTAIRYPRGAGEDVSTSQEIESIPILEIGRGELLREGDDILLLPIGNRVYPAMRAAEELAKQGISASVINPRFIKPLDAELICQQAKKTGRIITIEDNTLCSGFGSAVLELLSQKSLYG--IKTKILGHPHAFVEHGPQKTLWENSGITSRGIIMAALDLL 634          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS2_GEOSL9.930e-1933.141-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_YERPS1.694e-1836.481-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPB1.694e-1836.481-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_VEREI1.694e-1837.431-deoxy-D-xylulose-5-phosphate synthase OS=Vermine... [more]
DXS_SYNS91.694e-1834.971-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHIDS1.694e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_NEIG21.694e-1837.341-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_NEIG11.694e-1837.341-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_HAEPS1.694e-1835.881-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_DESPS1.694e-1836.201-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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