CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANADE (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=dxs PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18 Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = -1 Query: 244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768 HM+ T+ + D P+ R+PRG G G L LEIGKGR++ V ++ G+ ++ + AA L ++ ++VTV D RF KPLD LI A + ++TVEEG + GGFG+ G+L+ L +R + +PD +I H A Q G+ + I+A +L+G K Sbjct: 457 HMLHTS-LQHDGPAALRYPRGAGEGVPL---EPARVLEIGKGRLVRNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAVTVVDPRFVKPLDEALICAEAARAKRVVTVEEGCLAGGFGTACLEAFERHGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDAEAIAAACRALVGDRK 631
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANAD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxs PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18 Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = -1 Query: 244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768 HM+ T+ + D P+ R+PRG G G L LEIGKGR+ V ++ G+ ++ + AA L ++ ++ TV D RF KPLD +LI A + ++TVEEG + GGFG+ G+L+ L +R + +PD +I H A Q G+ + I+A +L+G K Sbjct: 457 HMLHTS-LQHDGPAALRYPRGAGEGVAL---EPARVLEIGKGRLARNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAATVVDPRFVKPLDEELICAEAGRAKRVVTVEEGCLAGGFGTACLEAFERRGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDADAIAAACRALVGDRK 631
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALSO (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia solanacearum GN=dxs PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18 Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = -1 Query: 268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756 + A D P+ R+PRG G G V+ + PL +GK + G RV IL +GS+V AA L + TV + RF KPLD + ++A H+ ++TVEEG V GG GS L +G+ L+L LPDR++DHG A L GL + I A++ Sbjct: 462 STAFAQDCPTAVRYPRGAGTGVVVQPTLE--PLPVGKAEVRRASTAPAGQRVVILAFGSMVAPAAAAAERLDA-----TVVNMRFVKPLDAACVLEMARTHDYVVTVEEGCVMGGAGSACLEALAAAGVATPVLQLG---LPDRFVDHGDHAALLALCGLDANGILASI 620
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia pickettii (strain 12J) GN=dxs PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18 Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = -1 Query: 268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756 + A D P+ R+PRG G G + + PL +GK + G RVAIL +GS+V AA L + TV + RF KPLD + ++A H+ ++T EEG V GG GS L +G+ L+L LPDR++DHG A L + GL + I A++ Sbjct: 462 STAFAQDCPTAVRYPRGAGTGVTVQPTLE--PLPVGKAEVRRTSTAPAGQRVAILAFGSMVAPASAAAERLDA-----TVVNMRFVKPLDVACVLEMARTHDFVVTAEEGCVMGGAGSACLEALAAAGVATPVLQLG---LPDRFVDHGDHAALLAQCGLDANGILASI 620
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup A GN=dxs PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18 Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = -1 Query: 256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738 D P+ R+PRG G G +P ++ +EIGKG I EG++ A + +GS+V + A L + TVAD RF KP+D +LI +LA H+ ++T+EE + GG GS V L GI L L + D HG P L++ GLS+ + V + L Sbjct: 479 DAPAAVRYPRGTGTG--VPVSDGMETVEIGKGIIRREGEKTAFIAFGSMVAPALAVAGKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGSAVLEVLAKHGICKPVLLLG---VADTVTGHGDPKKLLDDLGLSAEAVERRVRAWL 630
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BUCAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dxs PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18 Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = -1 Query: 286 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD-----QLEESGLSSR 765 M+ T + + PS R+P+G GIG L + +GK I G+++AIL +G+++Q LAA L + T+ D RF KPLDT++I +L+ ++ L+T+EEG + GG GS V F+ + IL L + ++ LPD +I HGS + QL+ G+ ++ Sbjct: 424 MLYTGYMYKEGPSVVRYPKGKGIGMSLSPMKL---IPLGKSLIKRVGEKIAILNFGALLQNAYLAAEKLNA-----TLIDMRFVKPLDTNMILKLSLKYNFLVTIEEGVIAGGAGSAVNEFIMMRKIL---LPVLNIGLPDMFIAHGSQEEIKHDYQLDPEGIQNK 578
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup B GN=dxs PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18 Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = -1 Query: 256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738 D P+ R+PRG G GA P ++ +EIGKG I EG++ A + +GS+V + A L + TVAD RF KP+D +LI +LA H+ ++T+EE + GG G V L GI L L + D HG P L++ GLS+ + V + L Sbjct: 479 DAPAAVRYPRGTGTGA--PVSDGMETVEIGKGIIRREGEKTAFIAFGSMVAPALAVAEKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLLLG---VADTVTGHGDPKKLLDDLGLSAEAVERRVRAWL 630
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOL5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dxs PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18 Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D PS R+PRGN +G L TPLE IGKG + G+++AIL +G+++ + A + ++ T+ D RF KPLD LI ++A HE L+TVEE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + + A + + L Sbjct: 460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKCRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVSVLNIGLPDFFIPQGTQEEMRAELGLDATGMEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO5E (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dxs PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18 Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D PS R+PRGN +G L TPLE IGKG + G+++AIL +G+++ + A + ++ T+ D RF KPLD LI ++A HE L+TVEE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + + A + + L Sbjct: 460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO57 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 GN=dxs PE=3 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18 Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D PS R+PRGN +G L TPLE IGKG + G+++AIL +G+++ + A + ++ T+ D RF KPLD LI ++A HE L+TVEE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + + A + + L Sbjct: 460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |