CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANADE (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HM+ T+ +  D P+  R+PRG G G  L        LEIGKGR++        V ++  G+ ++  + AA  L ++ ++VTV D RF KPLD  LI   A   + ++TVEEG + GGFG+         G+L+  L +R + +PD +I H   A Q    G+ +  I+A   +L+G  K
Sbjct:  457 HMLHTS-LQHDGPAALRYPRGAGEGVPL---EPARVLEIGKGRLVRNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAVTVVDPRFVKPLDEALICAEAARAKRVVTVEEGCLAGGFGTACLEAFERHGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDAEAIAAACRALVGDRK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANAD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HM+ T+ +  D P+  R+PRG G G  L        LEIGKGR+         V ++  G+ ++  + AA  L ++ ++ TV D RF KPLD +LI   A   + ++TVEEG + GGFG+         G+L+  L +R + +PD +I H   A Q    G+ +  I+A   +L+G  K
Sbjct:  457 HMLHTS-LQHDGPAALRYPRGAGEGVAL---EPARVLEIGKGRLARNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAATVVDPRFVKPLDEELICAEAGRAKRVVTVEEGCLAGGFGTACLEAFERRGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDADAIAAACRALVGDRK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALSO (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia solanacearum GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = -1
Query:  268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756
            + A   D P+  R+PRG G G V+    +  PL +GK  +        G RV IL +GS+V     AA  L +     TV + RF KPLD   + ++A  H+ ++TVEEG V GG GS     L  +G+    L+L    LPDR++DHG  A  L   GL +  I A++
Sbjct:  462 STAFAQDCPTAVRYPRGAGTGVVVQPTLE--PLPVGKAEVRRASTAPAGQRVVILAFGSMVAPAAAAAERLDA-----TVVNMRFVKPLDAACVLEMARTHDYVVTVEEGCVMGGAGSACLEALAAAGVATPVLQLG---LPDRFVDHGDHAALLALCGLDANGILASI 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia pickettii (strain 12J) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = -1
Query:  268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756
            + A   D P+  R+PRG G G  +    +  PL +GK  +        G RVAIL +GS+V     AA  L +     TV + RF KPLD   + ++A  H+ ++T EEG V GG GS     L  +G+    L+L    LPDR++DHG  A  L + GL +  I A++
Sbjct:  462 STAFAQDCPTAVRYPRGAGTGVTVQPTLE--PLPVGKAEVRRTSTAPAGQRVAILAFGSMVAPASAAAERLDA-----TVVNMRFVKPLDVACVLEMARTHDFVVTAEEGCVMGGAGSACLEALAAAGVATPVLQLG---LPDRFVDHGDHAALLAQCGLDANGILASI 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup A GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P+  R+PRG G G  +P ++    +EIGKG I  EG++ A + +GS+V   +  A  L +     TVAD RF KP+D +LI +LA  H+ ++T+EE +  GG GS V   L   GI    L L    + D    HG P   L++ GLS+  +   V + L
Sbjct:  479 DAPAAVRYPRGTGTG--VPVSDGMETVEIGKGIIRREGEKTAFIAFGSMVAPALAVAGKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGSAVLEVLAKHGICKPVLLLG---VADTVTGHGDPKKLLDDLGLSAEAVERRVRAWL 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BUCAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = -1
Query:  286 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD-----QLEESGLSSR 765
            M+ T  +  + PS  R+P+G GIG  L        + +GK  I   G+++AIL +G+++Q   LAA  L +     T+ D RF KPLDT++I +L+ ++  L+T+EEG + GG GS V  F+ +  IL   L + ++ LPD +I HGS  +     QL+  G+ ++
Sbjct:  424 MLYTGYMYKEGPSVVRYPKGKGIGMSLSPMKL---IPLGKSLIKRVGEKIAILNFGALLQNAYLAAEKLNA-----TLIDMRFVKPLDTNMILKLSLKYNFLVTIEEGVIAGGAGSAVNEFIMMRKIL---LPVLNIGLPDMFIAHGSQEEIKHDYQLDPEGIQNK 578          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup B GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P+  R+PRG G GA  P ++    +EIGKG I  EG++ A + +GS+V   +  A  L +     TVAD RF KP+D +LI +LA  H+ ++T+EE +  GG G  V   L   GI    L L    + D    HG P   L++ GLS+  +   V + L
Sbjct:  479 DAPAAVRYPRGTGTGA--PVSDGMETVEIGKGIIRREGEKTAFIAFGSMVAPALAVAEKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLLLG---VADTVTGHGDPKKLLDDLGLSAEAVERRVRAWL 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOL5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKCRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVSVLNIGLPDFFIPQGTQEEMRAELGLDATGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO5E (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO57 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 GN=dxs PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_ANADE1.694e-1834.641-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_ANAD21.694e-1834.081-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_RALSO2.212e-1836.691-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_RALPJ2.212e-1836.091-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_NEIMA2.212e-1837.041-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_BUCAP2.212e-1835.541-deoxy-D-xylulose-5-phosphate synthase OS=Buchner... [more]
DXS_NEIMB2.889e-1837.041-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_ECOL52.889e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO5E2.889e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO572.889e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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