CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CYTH3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732
            P   R+PRG G   V+P  N  TP E   IGKGR + +GD VAIL  G +    + A  +L+ +++S    D RF KP+D +++  +  + + +ITVE+G  +GGFGS V  F+  +      ++L    +PDR ++HG  A+  +E G   + I+ TV +L G
Sbjct:  477 PFSIRYPRGQG---VMP--NWKTPFEEITIGKGRKVSDGDDVAILSIGHIGNYVIEAKALLREEELSPAHFDMRFVKPIDEEMLHLVFKKFKKIITVEDGCLMGGFGSAVLEFMADNNYAAQVIRLG---IPDRIVEHGEQAELHKECGFDPQSIARTVRNLSG 632          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANADF (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 58/176 (32.95%), Postives = 90/176 (51.14%), Query Frame = -1
Query:  253 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 768
            HM+ TA +  D P+ FRFPRG G G  L        L IGKGR+         V ++  G+ +   + AA  L    ++ +V DARF KPLD +LI   A     ++T+EEG + GGFG+         G++   L+++ + LPD ++ HG    Q  + GL +  I+    +++G
Sbjct:  456 HMLHTA-LHHDGPAAFRFPRGAGEGVALEAPQV---LPIGKGRLARAVPGKPDVCVVALGTTLHAALAAAEALAKDGVAASVVDARFAKPLDEELIAGEAERARCVVTIEEGCLPGGFGAACLELFERRGLVAEGLRVKRLGLPDEFVTHGDQGRQRAQLGLDADGIARACRAIVG 627          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHIBS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHIB3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRAP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = -1
Query:  244 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 732
            P+  R+PRG GIGA +  N     +++GK +++ +G RVAIL +G+++      AN L  +   +TV D RF KPLD  +I Q+   H I+ T+EE S+ GG GS V  ++  +  L   + +R+  L D ++ HG+    L+ S LS   I+  +  LL   K
Sbjct:  464 PAMVRYPRGAGIGAEITDN---LDIKLGKAKLVKKGSRVAILNFGTLLP----LANQLADK-YHITVVDMRFVKPLDEQMINQICQNHNIVFTLEESSIAGGAGSAVNEYI-FANDLSKNITVRNFGLKDEFLTHGTKDLLLDYSNLSFNKIAEVLEKLLSHKK 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ESCF3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE LIT+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALITIEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOUT (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEIAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOLI (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12) GN=dxs PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOL6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6 GN=dxs PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDATGMEAKIKAWL 619          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_CYTH32.889e-1835.981-deoxy-D-xylulose-5-phosphate synthase OS=Cytopha... [more]
DXS_ANADF2.889e-1832.951-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_SHIBS3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_SHIB33.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_FRAP23.773e-1835.371-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_ESCF33.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOUT3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOSM3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOLI3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOL63.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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