CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOK1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O1:K1 / APEC GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECODH (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12 / DH10B) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOBW (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12 / BW2952) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO81 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O81 (strain ED1a) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDATGMEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO7I (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDATGMEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECO45 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACTPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 54/165 (32.73%), Postives = 93/165 (56.36%), Query Frame = -1 
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMV---LPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P+  R+PRGN  G  L        LE+GKG+++ +G +VAIL +G ++ +  + A     +  + T+AD RF KPLD  L+ +LA+ HE+L+T+EE ++ GG GS V  +L   G      K+R +V   +PD ++   + A+   + GL +  I   + +++ +
Sbjct:  467 PTAVRYPRGNAQGVALAPMQA---LEVGKGKLIQQGQKVAILNFGPLLNEARIVA-----EKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIG------KIRPLVMLGIPDFFVPQATQAESYADLGLDAAGIEQRIQAVVNQ 617
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACTP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 54/165 (32.73%), Postives = 93/165 (56.36%), Query Frame = -1 
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMV---LPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P+  R+PRGN  G  L        LE+GKG+++ +G +VAIL +G ++ +  + A     +  + T+AD RF KPLD  L+ +LA+ HE+L+T+EE ++ GG GS V  +L   G      K+R +V   +PD ++   + A+   + GL +  I   + +++ +
Sbjct:  467 PTAVRYPRGNAQGVALAPMQA---LEVGKGKLIQQGQKVAILNFGPLLNEARIVA-----EKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIG------KIRPLVMLGIPDFFVPQATQAESYADLGLDAAGIEQRIQAVVNQ 617
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACTP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.773e-18
Identity = 54/165 (32.73%), Postives = 93/165 (56.36%), Query Frame = -1 
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMV---LPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P+  R+PRGN  G  L        LE+GKG+++ +G +VAIL +G ++ +  + A     +  + T+AD RF KPLD  L+ +LA+ HE+L+T+EE ++ GG GS V  +L   G      K+R +V   +PD ++   + A+   + GL +  I   + +++ +
Sbjct:  467 PTAVRYPRGNAQGVALAPMQA---LEVGKGKLIQQGQKVAILNFGPLLNEARIVA-----EKHNYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIG------KIRPLVMLGIPDFFVPQATQAESYADLGLDAAGIEQRIQAVVNQ 617
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THETN (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermoanaerobacter tengcongensis GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 54/159 (33.96%), Postives = 89/159 (55.97%), Query Frame = -1 
Query:  265 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 738
            D P   R+PRG   G          PL  GKG +L+EG+++A+   G +V + + AA +LK   I+  V + RF KPLD +LI +++N+ ++++TVE+  + GG GS +   L    +    L+L     PD++I+HG      ++ GL S+ I+ T+L
Sbjct:  461 DFPVAIRYPRGKA-GEYDISRKPSFPL--GKGEVLLEGEKIAVFALGRMVSKSIDAAEILKGHGINPFVVNLRFVKPLDEELILEISNKVDLVVTVEDNVIAGGVGSAILELLNDKKVYRPVLRLG---FPDKFIEHGDVESLFKKYGLDSQSIADTIL 613
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_ECOK13.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECODH3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOBW3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO813.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO7I3.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO453.773e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ACTPJ3.773e-1832.731-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_ACTP73.773e-1832.731-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_ACTP23.773e-1832.731-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_THETN4.928e-1833.961-deoxy-D-xylulose-5-phosphate synthase OS=Thermoa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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