CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AQUAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Aquifex aeolicus GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 54/141 (38.30%), Postives = 78/141 (55.32%), Query Frame = -1
Query:  328 VIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 747
            +   +P   R+PRG   G       K   +EIG    L+EG+   IL  G  V Q + AA  L  + I V V +ARF KP+D  ++R LAN ++  ITVE+ + VGGFGS V  F    GI+    ++ ++ +PDR+I+HG
Sbjct:  464 IYSGKPFALRYPRGAAYGVPTEGFKK---IEIGTWEELLEGEDCVILAVGYPVYQALRAAEKLYKEGIRVGVVNARFVKPMDEKMLRDLANRYDTFITVEDNTVVGGFGSGVLEFFAREGIMK---RVINLGVPDRFIEHG 598          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANASK (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain K) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 60/179 (33.52%), Postives = 95/179 (53.07%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HM+ T+ +  + P+  R+PRG G G  L        LEIGKGR++        V ++  G+ ++  + AA  L ++ ++ TV D RF KPLD +LI   A   + ++TVEEG + GGFG+         G+L+  L +R + +PD +I H   A Q    G+ +  I+A   +L+G  K
Sbjct:  457 HMLHTS-LQHEGPAALRYPRGAGEGVAL---EPARVLEIGKGRLVRNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAATVVDPRFVKPLDEELICAEAARAKRVVTVEEGCLAGGFGTACLEAFERRGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDADAIAAACRALVGDRK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            D P+  R PRG G G  +P   +G   L IG G ++ EG+ V I+ YG++V + +  A  L +  + V V +AR+ +PLD  LI  +A +   ++T+EEG++ GGFGS V   L   G+    L++    +PDR +DH +P    E  GL+   ++  +
Sbjct:  468 DGPTALRIPRGPGEG--VPLMEEGWEALPIGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIHPMAKQIGKIVTMEEGALAGGFGSAVLESLQEKGLAIPMLRIG---IPDRLVDHATPQQSFEALGLTPDQMAVRI 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHISS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella sonnei (strain Ss046) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++      A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPDAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SACD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  250 RFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 720
            R+PRG G GAV+   N+  P  IGKGR L +G  V  + +G ++   +  A     +  +  V D R+ KPLD DL+  +A +++ L+T+EE +V GG G+ V   L   GI    L L    LPD Y+DHG  +  L+ +GL    I+  +   L R
Sbjct:  489 RYPRGTGPGAVIELENQHWP--IGKGRELRQGKTVCFINFGVLLPDAIAVA-----EANNYGVCDMRWAKPLDKDLLLNMAEQYDYLVTLEENAVAGGAGAGVMELLAAEGISTPVLPLG---LPDEYLDHGKRSQLLQAAGLDRASINQRINQWLSR 636          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIMF (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 60/162 (37.04%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P+  R+PRG G GA  P ++    +EIGKG I  EG + A + +GS+V   +  A  L +     TVAD RF KP+D +LI +LA  H+ ++T+EE +  GG G  V   L   GI    L L    + D    HG P   L++ GLS+  +   V + L
Sbjct:  479 DAPAAVRYPRGTGTGA--PVSDGMETVEIGKGIIRREGGKTAFIAFGSMVAPALAVAGKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLLLG---VADTVTGHGDPKKLLDDLGLSAEAVERRVRAWL 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NEIM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P+  R+PRG G G  +P ++    +EIGKG I  EG++ A + +GS+V   +  A  L +     TVAD RF KP+D +LI +LA  H+ ++T+EE +  GG G  V   L   GI    L L    + D    HG P   L++ GLS+  +   V + L
Sbjct:  477 DAPAAVRYPRGTGTG--VPVSDGMETVEIGKGIIRREGEKTAFIAFGSMVAPALAVAEKLNA-----TVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLLLG---VADTVTGHGDPKKLLDDLGLSAEAVERRVRAWL 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOSE (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain SE11) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++      A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPDAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOLC (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++      A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPDAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOHS (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O9:H4 (strain HS) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++      A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPDAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_AQUAE4.928e-1838.301-deoxy-D-xylulose-5-phosphate synthase OS=Aquifex... [more]
DXS_ANASK4.928e-1833.521-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_SYNS36.436e-1834.591-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHISS6.436e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_SACD26.436e-1836.081-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_NEIMF6.436e-1837.041-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_NEIM06.436e-1836.421-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_ECOSE6.436e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOLC6.436e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOHS6.436e-1835.061-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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