CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_YERP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.406e-18
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG  AVL       PLE   IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L         + + ++ LPD ++  G   +   E GL +  I   +
Sbjct:  470 PAAVRYPRGNGTSAVLE------PLEMLPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELLMAKRRW---VPVLNIGLPDLFVPQGEQDEMRSELGLDAAGIQRQI 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_EDWI9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.406e-18
Identity = 65/173 (37.57%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  250 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 765
            M+ T     + PS  R+PRG G GA L        L IGKG +   G+R+AIL +GS++ Q + AA  L +     +VAD RF KPLD  L+R LA +HE L+T+EE +V GG GS V   L     L  P  + ++ L D ++  GS  +   +  L +  I A +   L R
Sbjct:  460 MLQTGYEYREGPSAVRYPRGTGTGAPLTPPQA---LPIGKGVLRRRGERIAILNFGSLLPQALEAAERLNA-----SVADMRFVKPLDDALVRSLAEQHEYLVTLEENAVMGGAGSGVNELLMQ---LRLPRPVLNIGLQDSFVPQGSQEEIRRDLQLDADGILAQLEGWLAR 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PHOLL (1-deoxy-D-xylulose-5-phosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.098e-17
Identity = 57/167 (34.13%), Postives = 92/167 (55.09%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T       P   R+PRG G GA      +   L IGKG I  +G++VAIL +G+++   + AA     + +  TV D RF KPLD +LI  +A+ H++L+T+EE ++ GG GS V   L   G L   +++ ++ LPD+++  GS  +   + GL +  I  ++
Sbjct:  460 MLHTGYHYQQGPVAVRYPRGTGTGAEPQPFEQ---LPIGKGVIRRQGNKVAILNFGTLLPDAITAA-----ESLDATVVDMRFVKPLDKELILDMADNHDLLVTLEENAIMGGAGSGVNELLMQKGRL---VQILNIGLPDQFVPQGSQEEIKADLGLDAAGIQNSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_KLEP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.098e-17
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T     D P   R+PRG+G GA L        L IGKG +  +G+++AIL +G+++ +    A+ L +     T+ D RF KPLDT LI QLA EH+ L+T+EE ++ GG GS V   L         + + ++ LPD +I  G+  +   + GL +  I A +
Sbjct:  460 MLYTGYHYSDGPCAVRYPRGSGTGATLEPL---ASLPIGKGVVKRQGEKIAILNFGTLLPEAAAVADKLNA-----TLVDMRFVKPLDTALILQLAGEHDALVTLEENAIMGGAGSGVNEVLMAH---RRAVPVLNIGLPDYFIPQGTQEEIRADLGLDAAGIEAKI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_KLEP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Klebsiella pneumoniae (strain 342) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.098e-17
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T     D P   R+PRG+G GA L        L IGKG +  +G+++AIL +G+++ +    A+ L +     T+ D RF KPLDT LI QLA EH+ L+T+EE ++ GG GS V   L         + + ++ LPD +I  G+  +   + GL +  I A +
Sbjct:  460 MLHTGYHYSDGPCAVRYPRGSGTGATLEPL---ASLPIGKGVVKRQGEKIAILNFGTLLPEAAAVADKLNA-----TLVDMRFVKPLDTALILQLAGEHDALVTLEENAIMGGAGSGVNEVLMAH---RRAVPVLNIGLPDYFIPQGTQEEIRADLGLDAAGIEAKI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHIFL (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella flexneri GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.434e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++ IL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLVILNFGTLMPETAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PARD8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.434e-17
Identity = 51/165 (30.91%), Postives = 90/165 (54.55%), Query Frame = -1
Query:  277 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHIS 768
            +++ T     D P   R+PRG G   +    N+   L IGKG+ L +GD +A+L  G +  + + A  M+K + +S+   D  + KPLD +L+ ++  ++  +ITVE G + GGFGS V  F+  +G       ++ + +PD +I+HGS  +  +  G+ +  I+
Sbjct:  466 NLMYTGYAAFDGPFVIRYPRGKG--EMKDWRNEMQVLPIGKGKKLRDGDDIAVLSIGPIGNEVIKAIEMVKEERVSIAHYDMIYLKPLDEELLHEIGQKYNRIITVENGVIKGGFGSAVLEFMADNGYTP---HVKRIGVPDAFIEHGSIPELYQLCGMDAESIA 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITOC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.434e-17
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = -1
Query:  250 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 738
            ++P+  R+PRG G G  +  +    PL  GK  +  +G  +AIL +G+ V   + AA  L +     TV + RF KPLD DL+ ++A  HE+L+TVE+  + GG GS V   L   G+   PL L    LPD +++HGS    LE+  L++  I   V +   R
Sbjct:  470 NQPAAVRYPRGKGPGVAVEASMTALPL--GKAELKRKGRGIAILAFGATVAPALEAAEKLDA-----TVVNMRFVKPLDEDLVLEMAMNHELLVTVEDNVIAGGAGSAVSECLAYHGV-SVPLLLHG--LPDNFLEHGSREALLEQCHLNAEGILQRVKTYRAR 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SERP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Serratia proteamaculans (strain 568) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.873e-17
Identity = 58/167 (34.73%), Postives = 90/167 (53.89%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T    ++ PS  R+PRGNG GA L   N    L IGKG +  EG+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI +LA  H+ L+T+EE ++ GG GS V   L     +   + + ++ LPD ++  GS  +   + GL +  I   +
Sbjct:  460 MLYTGYHYNEGPSAVRYPRGNGTGAPLEPLNS---LPIGKGVVRREGEKLAILNFGTLLPEAAQVAETLNA-----TLVDMRFVKPLDEQLILELAASHDALVTLEENAIMGGAGSGVNELLMARRRV---VPVLNIGLPDFFVSQGSQEEVRSDLGLDAAGIQRQI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEHT (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.873e-17
Identity = 50/160 (31.25%), Postives = 93/160 (58.13%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P   R+PRG+   A +  N +   LEIGK  ++ +G +VAIL +G++++   LAA+     +++ T+ + RF KPLDT L+ +L N H++++T+E+ ++ GG GS V  +L         + + ++ +PD +I HG+  +  +E GL  + I   + + +
Sbjct:  470 PVAVRYPRGSAGTAEIATNMQ--LLEIGKADVVKQGAKVAILSFGTLLENAQLAAD-----ELNATLVNMRFIKPLDTALLDELINSHDVIVTLEDNAISGGAGSAVNEYLATQ---KAQVSILNLGIPDEFIKHGTQDEMHDEMGLGEQGILTAIKAFI 619          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_YERP38.406e-1835.851-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_EDWI98.406e-1837.571-deoxy-D-xylulose-5-phosphate synthase OS=Edwards... [more]
DXS_PHOLL1.098e-1734.131-deoxy-D-xylulose-5-phosphate synthase OS=Photorh... [more]
DXS_KLEP71.098e-1735.331-deoxy-D-xylulose-5-phosphate synthase OS=Klebsie... [more]
DXS_KLEP31.098e-1735.331-deoxy-D-xylulose-5-phosphate synthase OS=Klebsie... [more]
DXS_SHIFL1.434e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_PARD81.434e-1730.911-deoxy-D-xylulose-5-phosphate synthase OS=Parabac... [more]
DXS_NITOC1.434e-1735.981-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_SERP51.873e-1734.731-deoxy-D-xylulose-5-phosphate synthase OS=Serrati... [more]
DXS_PSEHT1.873e-1731.251-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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