CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOLU (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dxs PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.873e-17 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D PS R+PRGN +G L TPLE IGKG + G+++AIL +G+++ + A + ++ T+ D RF KPLD LI ++A HE L+TVEE ++ GG GS V L P+ + ++ LPD +I G+ + E L + + A + + L Sbjct: 460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELSLDAAGMEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas campestris pv. campestris GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17 Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = -1 Query: 235 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL----SLLGRPKEAL 732 P+ R+PRG G G L + T L IGK ++ G R+A+LG+G+ V A +++ +TV + RF KPLD ++ +LA HE +++E+ V GG GS V L G+L + + + LPD + H S D L E+G+ I A VL L+ + ++AL Sbjct: 473 PAAVRYPRGTGPGTAL--DAALTTLPIGKAQLRHSGARIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIEDNVVAGGAGSGVSELLNAEGVL---MPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQAL 633
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANC8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dxs PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17 Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = -1 Query: 235 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL----SLLGRPKEAL 732 P+ R+PRG G G L + T L IGK ++ G R+A+LG+G+ V A +++ +TV + RF KPLD ++ +LA HE +++E+ V GG GS V L G+L + + + LPD + H S D L E+G+ I A VL L+ + ++AL Sbjct: 473 PAAVRYPRGTGPGTAL--DAALTTLPIGKAQLRHSGARIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIEDNVVAGGAGSGVSELLNAEGVL---MPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQAL 633
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALHS (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella heidelberg (strain SL476) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D P+ R+PRGN G L TPLE IGKG + G+++AIL +G+++ + A L + T+ D RF KPLD LI ++A +H+ L+T+EE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + I A + + L Sbjct: 460 MLLTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopirellula baltica GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17 Identity = 53/167 (31.74%), Postives = 95/167 (56.89%), Query Frame = -1 Query: 277 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRS---MVLPDRYIDHGSPADQLEESGLSSRHIS 765 M+ A+ D PS R+P+ + + A + P+EIGK + EG I+ YG++++Q + AA L+ ++ + V +ARF KP+D +++ + ++ ++T+EEG+ VGGFGS L +D L R+ + LPD ++ HG + L++S LS++ I+ Sbjct: 463 MMLDKALTLDHPSGIRYPKASALEAT----HTPAPIEIGKAEWIREGTDGTIVAYGAMLEQAIAAAEQLEG-ELEIGVVNARFVKPIDAEMVHKTLSDGRFVVTLEEGTRVGGFGS-----AFLESAVDQRLDTRAVHRLALPDEFVLHGDRSQLLDQSTLSAQKIA 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17 Identity = 57/169 (33.73%), Postives = 93/169 (55.03%), Query Frame = -1 Query: 250 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 753 A V+DD P+ RF +G +G +P + +++ + D V ++ G++ C+ A++L Q IS TV D R+ KP+D + + LA H +++TVE+ S VGG GS V L +G+ + LR +P R++DH S A+ L E GL++ I+ V L+ R Sbjct: 460 AVVVDDAPTVVRFSKG-AVGPAVPAVGRVGGMDVLRAPGTGTPD-VLLVSVGALAPMCLEVADLLNKQGISTTVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGSAVAQALRDAGV---DVPLRDFGIPPRFLDHASRAEVLAEIGLTAPDIARQVTGLVAR 622
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALTY (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella typhimurium GN=dxs PE=3 SV=3) HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D P+ R+PRGN G L TPLE IGKG + G+++AIL +G+++ + A L + T+ D RF KPLD LI ++A +H+ L+T+EE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + I A + + L Sbjct: 460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALTI (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella typhi GN=dxs PE=3 SV=3) HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D P+ R+PRGN G L TPLE IGKG + G+++AIL +G+++ + A L + T+ D RF KPLD LI ++A +H+ L+T+EE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + I A + + L Sbjct: 460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALSV (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=dxs PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D P+ R+PRGN G L TPLE IGKG + G+++AIL +G+++ + A L + T+ D RF KPLD LI ++A +H+ L+T+EE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + I A + + L Sbjct: 460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=dxs PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17 Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = -1 Query: 268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765 M+ T +D P+ R+PRGN G L TPLE IGKG + G+++AIL +G+++ + A L + T+ D RF KPLD LI ++A +H+ L+T+EE ++ GG GS V L P+ + ++ LPD +I G+ + E GL + I A + Sbjct: 460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDLFIPQGTQEEARAELGLDAAGIEAKI 615 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |