CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ECOLU (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.873e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D PS  R+PRGN +G  L      TPLE   IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E  L +  + A + + L
Sbjct:  460 MLYTGYHYNDGPSAVRYPRGNAVGVEL------TPLEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELSLDAAGMEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas campestris pv. campestris GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = -1
Query:  235 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL----SLLGRPKEAL 732
            P+  R+PRG G G  L  +   T L IGK ++   G R+A+LG+G+ V      A     +++ +TV + RF KPLD  ++ +LA  HE  +++E+  V GG GS V   L   G+L   + +  + LPD +  H S  D L E+G+    I A VL     L+ + ++AL
Sbjct:  473 PAAVRYPRGTGPGTAL--DAALTTLPIGKAQLRHSGARIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIEDNVVAGGAGSGVSELLNAEGVL---MPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQAL 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANC8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dxs PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = -1
Query:  235 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL----SLLGRPKEAL 732
            P+  R+PRG G G  L  +   T L IGK ++   G R+A+LG+G+ V      A     +++ +TV + RF KPLD  ++ +LA  HE  +++E+  V GG GS V   L   G+L   + +  + LPD +  H S  D L E+G+    I A VL     L+ + ++AL
Sbjct:  473 PAAVRYPRGTGPGTAL--DAALTTLPIGKAQLRHSGARIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIEDNVVAGGAGSGVSELLNAEGVL---MPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQAL 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALHS (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella heidelberg (strain SL476) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLLTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopirellula baltica GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 53/167 (31.74%), Postives = 95/167 (56.89%), Query Frame = -1
Query:  277 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRS---MVLPDRYIDHGSPADQLEESGLSSRHIS 765
            M+   A+  D PS  R+P+ + + A     +   P+EIGK   + EG    I+ YG++++Q + AA  L+  ++ + V +ARF KP+D +++ +  ++   ++T+EEG+ VGGFGS       L   +D  L  R+   + LPD ++ HG  +  L++S LS++ I+
Sbjct:  463 MMLDKALTLDHPSGIRYPKASALEAT----HTPAPIEIGKAEWIREGTDGTIVAYGAMLEQAIAAAEQLEG-ELEIGVVNARFVKPIDAEMVHKTLSDGRFVVTLEEGTRVGGFGS-----AFLESAVDQRLDTRAVHRLALPDEFVLHGDRSQLLDQSTLSAQKIA 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 57/169 (33.73%), Postives = 93/169 (55.03%), Query Frame = -1
Query:  250 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 753
            A V+DD P+  RF +G  +G  +P   +   +++ +       D V ++  G++   C+  A++L  Q IS TV D R+ KP+D + +  LA  H +++TVE+ S VGG GS V   L  +G+    + LR   +P R++DH S A+ L E GL++  I+  V  L+ R
Sbjct:  460 AVVVDDAPTVVRFSKG-AVGPAVPAVGRVGGMDVLRAPGTGTPD-VLLVSVGALAPMCLEVADLLNKQGISTTVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGSAVAQALRDAGV---DVPLRDFGIPPRFLDHASRAEVLAEIGLTAPDIARQVTGLVAR 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALTY (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella typhimurium GN=dxs PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALTI (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella typhi GN=dxs PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALSV (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A +
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDLFIPQGTQEEARAELGLDAAGIEAKI 615          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_ECOLU1.873e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_XANCP2.446e-1734.501-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_XANC82.446e-1734.501-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_SALHS2.446e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_RHOBA2.446e-1731.741-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopi... [more]
DXS2_STRCO2.446e-1733.731-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_SALTY3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALTI3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALSV3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALPK3.194e-1734.711-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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