CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi C (strain RKS4594) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi A GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = -1 
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A +
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDLFIPQGTQEEARAELGLDAAGIEAKI 615
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALNS (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella newport (strain SL254) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALG2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALEP (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALDC (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella dublin (strain CT_02021853) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SALCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella choleraesuis GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -1 
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLE---IGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRGN  G  L      TPLE   IGKG +   G+++AIL +G+++ +    A  L +     T+ D RF KPLD  LI ++A +H+ L+T+EE ++ GG GS V   L        P+ + ++ LPD +I  G+  +   E GL +  I A + + L
Sbjct:  460 MLFTGYHYNDGPTAVRYPRGNAQGVAL------TPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAKVAEALNA-----TLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWL 619
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROMH (1-deoxy-D-xylulose-5-phosphate synthase OS=Proteus mirabilis (strain HI4320) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 58/167 (34.73%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T     + P   R+PRG+G+GA L   ++   L IGKG I  +G  +AIL +G+++ + +  A  L +     TVAD RF KPLD +LI  LA +H+IL+T+EE ++ GG GS V   L     L   + + ++ LPD ++  G   +   + GL +  I  ++
Sbjct:  460 MLHTGYHYQEGPVAVRYPRGSGVGAPLQPLSE---LPIGKGIIRRQGKSIAILNFGTLLPEALDVAEKLDA-----TVADMRFIKPLDKELILSLAKQHDILVTLEENAIMGGAGSGVNELLMQERCL---VPVLNLGLPDLFVPQGGQEEIRADLGLDATGIEKSI 615
[Close]
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BLOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = -1 
Query:  289 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSS 732
            PS  R+P+G  +   L    K   L + KG I  +G+ +AIL +G+++Q     A+ L +     T+ D RF KPLD +LI+ LA  H++LIT+EE +V GG GS V  F+  + +    + + ++ LPD +I  GS ++ L E GL S
Sbjct:  472 PSVVRYPKGYAVPGNLADTTKLYTLPLSKGVIRRQGNCIAILNFGTLLQSAYNVASKLNA-----TLVDMRFVKPLDENLIKTLAKNHQVLITLEENTVMGGAGSGVNEFIMQNKL---SIPVLNIGLPDFFISQGSQSEILSELGLDS 612
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_SALPC3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALPB3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALPA3.194e-1734.711-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALNS3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALG23.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALEP3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALDC3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALCH3.194e-1734.481-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_PROMH3.194e-1734.731-deoxy-D-xylulose-5-phosphate synthase OS=Proteus... [more]
DXS_BLOPB3.194e-1736.911-deoxy-D-xylulose-5-phosphate synthase OS=Blochma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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