CX043816

Overview
NameCX043816
Unique NameCX043816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043816 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX043816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_LUPAL6.158e-36100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS6.158e-36100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU6.158e-36100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN6.158e-36100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN6.158e-36100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA6.158e-36100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA6.158e-36100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA6.158e-36100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA6.158e-36100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF6.158e-36100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F03-L5-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043816 ID=CX043816; Name=CX043816; organism=Citrus sinensis; type=EST; length=629bp
CTGGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAAAACCCTAA
CGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGACAAT
GTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCG
TCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACT
ACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGT
GGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAA
GCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCG
ATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCTGAG
TGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTGCGG
CAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGATCGA
GATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGGTTT
TTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATATACT
TGTTTGCTGGAGCGTTTTAATTAAATCCT
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