DC900380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_PYRCJ (50S ribosomal protein L24P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1 Query: 76 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 369 S+ RK R + + AP +RR L++A LS +L++K V+ +PVR+ D V ++RG +KG GKVV+V ++ I +E TR G TV I+PSKV+I Sbjct: 6 SAQPRKQRLSLYAAPLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVEGATRTNSRGQTVYYPIHPSKVMI 103
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_METMP (50S ribosomal protein L24P OS=Methanococcus maripaludis GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 76 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 S RK RKA + AP +R +MSA L+ +L++KY S+PV+K D V+V+RG +KG EG+V +V + I +E + +K +G+ I+PS V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMSAMLAKELKEKYAKNSLPVKKGDTVKVLRGNFKGIEGEVSKVDYAGYKIIVEGVVNKKQDGNETAYPIHPSNVMIT 104
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_METVS (50S ribosomal protein L24P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13 Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 76 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 S RK RKA + AP +R +MSA LS L++KY ++PV+K D V+V+RG++KG EG+V +V + I +E + +K +G I+PS V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_METVA (50S ribosomal protein L24P OS=Methanococcus vannielii GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13 Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 76 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 S RK RKA + AP +R +MSA LS L++KY ++PV+K D V+V+RG++KG EG+V +V + I +E + +K +G I+PS V+IT Sbjct: 6 SKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMIT 104
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_CALMQ (50S ribosomal protein L24P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13 Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 76 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 369 SS RK KA AP RR L++APLS DL+++ +R +PVR D V ++RG +KG GKV +V ++ I+++ + +K +G V I+PSKVVI Sbjct: 7 SSQPRKQHKALTKAPWHARRRLLTAPLSKDLQRQLGIRRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVDSASFKKPSGEAVYYPIHPSKVVI 104
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_METMA (50S ribosomal protein L24P OS=Methanosarcina mazei GN=rpl24p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13 Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1 Query: 73 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 VS RK RKA +TAP +R+ M A LS L ++Y RS V D V+++RG +KG EGKV V I ++ + KV+G+ V INPS V+IT Sbjct: 8 VSKQPRKQRKARYTAPLHIRQKFMGARLSEALAKQYGTRSAAVITGDTVKIMRGDFKGTEGKVQSVSLMDGTIAVDGVISTKVDGTEVPRPINPSNVMIT 107
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_ARCFU (50S ribosomal protein L24P OS=Archaeoglobus fulgidus GN=rpl24p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13 Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 67 PRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 P+ R++ R + TA R L+ A LS DLR+KY R++ VRK D+V+++RG + G EG+V++V ++ I ++ +T K +G+ V V I+PS V+IT Sbjct: 4 PKSKQPRKQRRWLYKTAKLHERHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMIT 105
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_METTP (50S ribosomal protein L24P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl24p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 73 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 VS RK RKA F AP +R+ M A LS +LR++Y RS V+K D V+V+RG G EG+V+ V ++ VI + ++ + +G+ V I+PS V+IT Sbjct: 2 VSKQPRKQRKARFNAPLHMRQRFMHAMLSPELRKEYKKRSAQVKKGDTVKVMRGDNAGVEGEVLSVDLKRCVITVAGVSNFRADGTEVPRPIHPSNVMIT 101
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL24_METBF (50S ribosomal protein L24P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl24p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13 Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 73 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 372 VS RK RKA + AP VR+ M A LS L ++Y RS V D V+V+RG YKG EGKV V + I ++ + KV+G+ V I PS V+IT Sbjct: 2 VSKQPRKQRKARYNAPLHVRQKFMGARLSEALSKEYGTRSAAVIAGDTVKVMRGDYKGTEGKVQAVSLQDGTISVDGVISTKVDGTEVPRPIYPSNVMIT 101
BLAST of DC900380 vs. ExPASy Swiss-Prot
Match: RL26_BRUPA (60S ribosomal protein L26 (Fragment) OS=Brugia pahangi PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13 Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 Query: 55 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 234 MK N VSSS RK RKA F APS +RR LMSAP + DLR K+ +RS+P+R DDEV V RG Sbjct: 1 MKQNQFVSSSARKARKAPFNAPSHIRRKLMSAPSTKDLRNKHGIRSIPIRIDDEVTVTRG 60 The following BLAST results are available for this feature:
BLAST of DC900380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900380 ID=DC900380; Name=DC900380; organism=Citrus sinensis; type=EST; length=695bpback to top |