CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  577 VAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 795
            +AP   IA NA           K  ++ TG+NA  +++ +M +AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  448 LAPLKRIAENAGQNGAVIGERVKEKDFNTGFNAANNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP + IA NA           +A ++  G+NA T  YE+++ AG+IDPAKV R ALQNA S+AGMVLTT+A+
Sbjct:  448 APVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEAL 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP + IA NA           +A ++  G+NA T  YE+++ AG+IDPAKV R ALQNA S+AGMVLTT+A+
Sbjct:  448 APVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEAL 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K   +T GY+A  D Y +M +AG++DPAKVTR ALQNAAS+A MVLTT+AI
Sbjct:  449 APLRRIAENAGQNGSIVLERVKEKPFTVGYDAQNDAYVDMFEAGIVDPAKVTRSALQNAASIASMVLTTEAI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K   +  GY+A  D+Y NM  AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  449 APLRRIAENAGQNGAIIVERVKEKPFDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACJO (60 kDa chaperonin OS=Lactobacillus johnsonii GN=groL PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  +   GYNA T+K+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  448 APVRQIAENAGKDGAVILDHLEHEDPEVGYNAATNKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K   +  GY+A  D+Y NM  AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  449 APLRRIAENAGQNGAIIVERVKEKPFDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_STACT (60 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K +E   GYNA TD++ NML AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  446 APVRQIAENAGLEGSIIVEKLKHAEPGIGYNAATDEWVNMLDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K +E   GYNA TD++ NM+ AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  446 APIRQIAENAGLEGSVIVEKIKHAETGVGYNAATDEWVNMIDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IAHNA           KA E   GYNA T +Y NM++ G++DP KVTR ALQNAASV+ M LTT+A+
Sbjct:  447 PVRQIAHNAGLEGSIIVEKLKAEEVGVGYNAATGEYVNMVETGILDPVKVTRSALQNAASVSAMFLTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CH602_TRIEI4.251e-1249.3260 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_THEVL4.251e-1250.0060 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB4.251e-1250.0060 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH602_SYNJA4.251e-1252.7860 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH60_THEEB5.551e-1252.7860 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_LACJO5.551e-1250.0060 kDa chaperonin OS=Lactobacillus johnsonii GN=gr... [more]
CH601_THEVL5.551e-1252.7860 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH60_STACT7.250e-1254.1760 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH60_MACCJ7.250e-1252.7860 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_BACSK7.250e-1252.1160 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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