CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACLM (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           ++ +  TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+
Sbjct:  447 PVRQIAANAGYEGSVIIDKLRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACDB (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  +   GYNA  DKY NM+  G+IDP +VTR ALQNAAS+AG++LTT+A+
Sbjct:  447 APVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAEDKYVNMIDEGIIDPTQVTRSALQNAASIAGLLLTTEAV 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACDA (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  +   GYNA  DKY NM+  G+IDP +VTR ALQNAAS+AG++LTT+A+
Sbjct:  447 APVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAEDKYVNMIDEGIIDPTQVTRSALQNAASIAGLLLTTEAV 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = -1
Query:  583 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 792
            AP   I  NA                  GYNA TD+Y +ML+AG+IDP KVTR AL+NAASVAGM+LTT+
Sbjct:  449 APLRTIVENAGLEGSVVVAKVAEGSGDFGYNAKTDEYVDMLKAGIIDPKKVTRVALENAASVAGMILTTE 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = -1
Query:  577 GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 708
            GYN  TDKYE++L AGV+DP KVTR ALQNAAS+AG++LTT+ +
Sbjct:  476 GYNVATDKYEDLLSAGVVDPTKVTRSALQNAASIAGLLLTTECV 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+   + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGANGAVVAENVKSRPISDGYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+   + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGANGAVVAENVKSRPISDGYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA            +   + GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++LTT+A+
Sbjct:  451 APLKQIAANAGKEGAIICQQVLSRSSSEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEAL 522          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = -1
Query:  577 GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 708
            GYNA TD YENM  AGV+DPAKVTR AL+NAAS+AGM LTT+ +
Sbjct:  477 GYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECV 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = -1
Query:  577 GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 708
            GYNA TD YENM  AGV+DPAKVTR AL+NAAS+AGM LTT+ +
Sbjct:  477 GYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECV 520          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CH60_LACLM3.598e-1147.8960 kDa chaperonin OS=Lactococcus lactis subsp. cre... [more]
CH60_LACDB3.598e-1148.6160 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_LACDA3.598e-1148.6160 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_FLAPJ3.598e-1151.4360 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_AKKM83.598e-1168.1860 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH602_PROMM3.598e-1152.7860 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_PROM33.598e-1152.7860 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_CHLCV3.598e-1145.8360 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH60_BACFR4.700e-1172.7360 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN4.700e-1172.7360 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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