CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_PROMA (60 kDa chaperonin 2 OS=Prochlorococcus marinus GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+     GYNA + +Y +ML AG++DPAKVTR  LQNA+S+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGANGAVIAEHVKSKPLNDGYNAASGEYVDMLSAGIVDPAKVTRSGLQNASSIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_PROM9 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+  +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+  +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  E+  G++A  +++ +M  AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  449 APLKRIAENAGQNGAVIAERVREKEFNVGFDASVNEFTDMFAAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_FLAJ1 (60 kDa chaperonin OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = -1
Query:  583 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 792
            AP   I  NA                  GYNA TD+Y +ML+AG+IDP KVTR AL+NAASV+GM+LTT+
Sbjct:  449 APLRTIVENAGLEGSVVVAKVAEGSGDFGYNAKTDEYVDMLKAGIIDPKKVTRVALENAASVSGMILTTE 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K      GYNA TD+Y +M++ G++DPAKVTR ALQNAASV+ M LTT+A+
Sbjct:  448 APLRQIAENAGQEGSVIVERLKHEAQGMGYNAATDEYVDMIETGIVDPAKVTRSALQNAASVSAMFLTTEAV 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_BLOPB (60 kDa chaperonin OS=Blochmannia pennsylvanicus (strain BPEN) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   I  NA           ++ E  TGYNA T+KY NM++ G++DP KVTR ALQ AAS+AG+++TT+ +
Sbjct:  449 APLRQIMANAGEEPSVIANNVRSGEGNTGYNAATEKYGNMIELGILDPTKVTRSALQYAASIAGLMITTECM 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   I  NA           ++ E  TGYNA T+KY NM++ G++DP KVTR ALQ AAS+AG+++TT+ +
Sbjct:  449 APLRQIMANAGEEPSVIANNVRSGEGNTGYNAATEKYGNMIELGILDPTKVTRSALQYAASIAGLMITTECM 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = -1
Query:  583 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 789
            P   IA NA            +SE   G++A+T+KY NM++AG++DP KVTR ALQNAASV+ M+LTT+
Sbjct:  449 PLRQIAANAGLEGSVIVEKVMSSEKGIGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTE 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = -1
Query:  580 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 792
            AP  +IA NA              +   GYNA T +Y ++++AGV+DP KVTR ALQNAAS+AG++LTT A
Sbjct:  449 APLRVIASNAGDEPSVVIAKVLEGKGNFGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASIAGLILTTDA 519          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CH602_PROMA6.138e-1150.0060 kDa chaperonin 2 OS=Prochlorococcus marinus GN=... [more]
CH602_PROM96.138e-1150.0060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM56.138e-1150.0060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_ACAM16.138e-1147.2260 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH60_FLAJ18.016e-1150.0060 kDa chaperonin OS=Flavobacterium johnsoniae (st... [more]
CH60_EXIS28.016e-1150.0060 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH60_BLOPB8.016e-1145.8360 kDa chaperonin OS=Blochmannia pennsylvanicus (s... [more]
CH60_BLOFL8.016e-1145.8360 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]
CH60_ALKOO8.016e-1149.2860 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH603_BURCM8.016e-1147.8960 kDa chaperonin 3 OS=Burkholderia ambifaria (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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