CX043786
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.397e-31 Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 2 Query: 485 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 F+ +Y+ ++ V L+ ++ +P I++S+RYSL AGGKR+RP+LCLA+C+L GG MA+P AC++EMIHTMSLIHDDLP MDND RRGKPTNH IYG Sbjct: 8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYG 111
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23 Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 2 Query: 530 QALDAAVS-----LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 QA++ A+S L+ P K+ ++M YSL AGGKR+RP+L L+ +G ++ +P AC+IEMIHT SLIHDDLP MDND LRRGKPTNH ++G Sbjct: 15 QAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFG 108
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22 Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 2 Query: 497 SYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 S++ + T+ L D P + +SM YSL AGGKR+RP++ LA + G E +P C++EMIHT SLIHDDLPCMD+D LRRGKPTNH ++G Sbjct: 7 SFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFG 107
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 569 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 784 ++HE++ YSL AGGKR+RP+L L D +GG+ +P ++EMIHT SLIHDDLP MDND RRGK TNH Sbjct: 30 RLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNH 101
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_AQUAE (Geranyltranstransferase OS=Aquifex aeolicus GN=ispA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16 Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 2 Query: 524 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 + + L+ + + P ++ E+M+Y L GKR+RP+ +A +GG+E A+ IE+IH SLIHDDLPCMDND RRG PT H +G Sbjct: 11 IEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFG 101
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14 Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 2 Query: 491 FKSYMIQKASTVNQALDAAVSLKDPVKIH-----ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 784 F + Q + +N+ L+A + ++ H E+M+Y+LL GGKRVRP L A ++G + AA +IE IH SLIHDDLP MD+D LRRG PT H Sbjct: 4 FSEELQQVQTRINRFLEAQF---EGIESHNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDNLRRGHPTCH 103
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14 Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 500 YMIQKASTVNQALDAAVSLKDP--VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 +M A V +AL + +D ++ +MRY+ L GGKR R +LCLAA L M +IEM+H +L+HDDLP MD+D LRRG PT H +G Sbjct: 36 WMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFG 136
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13 Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 500 YMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 +M A V QAL + +D ++ +MRY+ L GGKR R +LCLAA L + +IEM+H +L+HDDLP MD+D LRRG PT H +G Sbjct: 36 WMQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFG 136
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13 Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 563 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 P + ++ + + AGGK++RP L L +C+ VGG+ A A +IE+IHT SLIHDD+ MD+D +RRG+P+ H I+G Sbjct: 28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWG 103
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 2 Query: 491 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 F +Y + ++VN + + +S D K++E+ + +GGKR+RP++ + DL GG A A +IE++HT +L+HDD+ MD D +RRG PT H YG Sbjct: 4 FDNYFNEIVNSVNDIIKSYIS-GDVPKLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYG 102 The following BLAST results are available for this feature:
BLAST of CX043786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043786 ID=CX043786; Name=CX043786; organism=Citrus sinensis; type=EST; length=796bpback to top |