CX043786

Overview
NameCX043786
Unique NameCX043786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.397e-31
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 2
Query:  485 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            F+  +Y+ ++   V   L+ ++   +P  I++S+RYSL AGGKR+RP+LCLA+C+L GG   MA+P AC++EMIHTMSLIHDDLP MDND  RRGKPTNH IYG
Sbjct:    8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYG 111          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 2
Query:  530 QALDAAVS-----LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            QA++ A+S     L+ P K+ ++M YSL AGGKR+RP+L L+    +G   ++ +P AC+IEMIHT SLIHDDLP MDND LRRGKPTNH ++G
Sbjct:   15 QAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFG 108          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  497 SYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            S++  +  T+   L       D P  + +SM YSL AGGKR+RP++ LA  +  G  E   +P  C++EMIHT SLIHDDLPCMD+D LRRGKPTNH ++G
Sbjct:    7 SFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFG 107          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  569 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 784
            ++HE++ YSL AGGKR+RP+L L   D +GG+    +P   ++EMIHT SLIHDDLP MDND  RRGK TNH
Sbjct:   30 RLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNH 101          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_AQUAE (Geranyltranstransferase OS=Aquifex aeolicus GN=ispA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  524 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            + + L+  +  + P ++ E+M+Y  L  GKR+RP+  +A    +GG+E  A+     IE+IH  SLIHDDLPCMDND  RRG PT H  +G
Sbjct:   11 IEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFG 101          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  491 FKSYMIQKASTVNQALDAAVSLKDPVKIH-----ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 784
            F   + Q  + +N+ L+A     + ++ H     E+M+Y+LL GGKRVRP L  A   ++G  +     AA +IE IH  SLIHDDLP MD+D LRRG PT H
Sbjct:    4 FSEELQQVQTRINRFLEAQF---EGIESHNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDNLRRGHPTCH 103          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  500 YMIQKASTVNQALDAAVSLKDP--VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            +M   A  V +AL   +  +D    ++  +MRY+ L GGKR R +LCLAA  L      M      +IEM+H  +L+HDDLP MD+D LRRG PT H  +G
Sbjct:   36 WMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFG 136          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  500 YMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            +M   A  V QAL   +  +D    ++  +MRY+ L GGKR R +LCLAA  L      +      +IEM+H  +L+HDDLP MD+D LRRG PT H  +G
Sbjct:   36 WMQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFG 136          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  563 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            P  + ++  + + AGGK++RP L L +C+ VGG+   A   A +IE+IHT SLIHDD+  MD+D +RRG+P+ H I+G
Sbjct:   28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWG 103          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  491 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            F +Y  +  ++VN  + + +S  D  K++E+  +   +GGKR+RP++   + DL GG    A  A  +IE++HT +L+HDD+  MD D +RRG PT H  YG
Sbjct:    4 FDNYFNEIVNSVNDIIKSYIS-GDVPKLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYG 102          
The following BLAST results are available for this feature:
BLAST of CX043786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CRTE_CYAPA2.397e-3157.69Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
ISPA_BACST4.098e-2355.32Geranyltranstransferase OS=Bacillus stearothermoph... [more]
ISPA_BACSU2.034e-2249.50Geranyltranstransferase OS=Bacillus subtilis GN=is... [more]
ISPA_MICLU2.327e-1858.33Geranyltranstransferase OS=Micrococcus luteus GN=f... [more]
ISPA_AQUAE6.337e-1643.96Geranyltranstransferase OS=Aquifex aeolicus GN=isp... [more]
ISPA_HAEIN2.662e-1443.69Geranyltranstransferase OS=Haemophilus influenzae ... [more]
ISPA_BRAJA7.746e-1442.57Probable geranyltranstransferase OS=Bradyrhizobium... [more]
ISPA_RHISN1.012e-1342.57Probable geranyltranstransferase OS=Rhizobium sp. ... [more]
IDSA_METTM1.726e-1346.15Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULAC1.726e-1338.24Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13D07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D07-H13-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043786 ID=CX043786; Name=CX043786; organism=Citrus sinensis; type=EST; length=796bp
AATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCTCCAC
CGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAAAAAA
AAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATTTCTG
TTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGGAGAG
GCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTCTCGC
ACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCGTCAA
TCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGCAGTC
GCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCCCGTT
TCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAGTTCA
AACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAGTCCT
ACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGCCGTT
TCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTTTACT
GGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGTGACC
TCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTATCGAG
ATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGGATAA
CGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGC
back to top