CX043786
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.119e-12 Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 2 Query: 488 DFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 DF + NQAL ++ + E+M+Y L GGKR+RP L A + G + A ++E IH SLIHDDLP MD+D LRRG PT H +G Sbjct: 2 DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFG 106
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.461e-12 Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2 Query: 491 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 F ++QK +++ L V D K++ + ++ L AGGKR+RP L + L +PAA ++E+IH +LIHDD+ MDND RRGKPT H +YG Sbjct: 13 FDKNILQK---IDEELKTYVDKDD--KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYG 107
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12 Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 2 Query: 572 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 + E+ + AGGKR+RP++ +++ DL+GG A AA ++E++H +L+HDD+ MDND LRRG PT H +G Sbjct: 32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWG 104
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_PANAN (Geranylgeranyl pyrophosphate synthetase OS=Pantoea ananas GN=crtE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12 Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 2 Query: 581 SMRYSLLAGGKRVRPVLCLAACDLVG---GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 +MR LA GKR+RP+L L +G H+ + + AC++EM+H SLI DD+PCMD+ LRRG+PT H+ YG Sbjct: 43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGL-LDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYG 116
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12 Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 2 Query: 527 NQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 ++ + ++S P + + + + AGGK++RP L L + + VGG A A +IE+IHT SLIHDD+ MD+D +RRG+P H ++G Sbjct: 16 DERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWG 103
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2 Query: 563 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE-SMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIY 793 P K+ ++ Y++ GG R+RP L L+ G +++ AA ++E+IH SL+HDDLPC D+ +RRGKPT H Y Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAY 101
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12 Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 2 Query: 581 SMRYSLLAGGKRVRPVLCL-AACDL-VGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796 +MR ++A GKR+RP+L L AA DL G + AC++E+ HT SL+ DD+PCMDN LRRG+PT H +G Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFG 115 The following BLAST results are available for this feature:
BLAST of CX043786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043786 ID=CX043786; Name=CX043786; organism=Citrus sinensis; type=EST; length=796bpback to top |