CX043786

Overview
NameCX043786
Unique NameCX043786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 2
Query:  488 DFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            DF   +       NQAL   ++        + E+M+Y  L GGKR+RP L  A   + G   +     A ++E IH  SLIHDDLP MD+D LRRG PT H  +G
Sbjct:    2 DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFG 106          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.461e-12
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  491 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            F   ++QK   +++ L   V   D  K++ + ++ L AGGKR+RP L +    L        +PAA ++E+IH  +LIHDD+  MDND  RRGKPT H +YG
Sbjct:   13 FDKNILQK---IDEELKTYVDKDD--KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYG 107          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  572 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            + E+  +   AGGKR+RP++ +++ DL+GG    A  AA ++E++H  +L+HDD+  MDND LRRG PT H  +G
Sbjct:   32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWG 104          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_PANAN (Geranylgeranyl pyrophosphate synthetase OS=Pantoea ananas GN=crtE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  581 SMRYSLLAGGKRVRPVLCLAACDLVG---GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            +MR   LA GKR+RP+L L     +G    H+ + +  AC++EM+H  SLI DD+PCMD+  LRRG+PT H+ YG
Sbjct:   43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGL-LDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYG 116          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  527 NQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            ++ +  ++S   P  +  +  + + AGGK++RP L L + + VGG    A   A +IE+IHT SLIHDD+  MD+D +RRG+P  H ++G
Sbjct:   16 DERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWG 103          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  563 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE-SMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIY 793
            P K+  ++ Y++  GG R+RP L L+     G    +++  AA ++E+IH  SL+HDDLPC D+  +RRGKPT H  Y
Sbjct:   24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAY 101          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  581 SMRYSLLAGGKRVRPVLCL-AACDL-VGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            +MR  ++A GKR+RP+L L AA DL   G     +  AC++E+ HT SL+ DD+PCMDN  LRRG+PT H  +G
Sbjct:   42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFG 115          
The following BLAST results are available for this feature:
BLAST of CX043786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISPA_ECOLI1.119e-1240.00Geranyltranstransferase OS=Escherichia coli (strai... [more]
IDSA_METJA1.461e-1240.20Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULSO3.255e-1244.00Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]
CRTE_PANAN5.551e-1248.00Geranylgeranyl pyrophosphate synthetase OS=Pantoea... [more]
IDSA_METTH7.250e-1238.89Bifunctional short chain isoprenyl diphosphate syn... [more]
CRTE_RHOS49.469e-1242.31Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
CRTE_ESCVU9.469e-1250.00Geranylgeranyl pyrophosphate synthetase OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D07-H13-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043786 ID=CX043786; Name=CX043786; organism=Citrus sinensis; type=EST; length=796bp
AATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCTCCAC
CGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAAAAAA
AAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATTTCTG
TTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGGAGAG
GCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTCTCGC
ACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCGTCAA
TCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGCAGTC
GCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCCCGTT
TCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAGTTCA
AACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAGTCCT
ACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGCCGTT
TCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTTTACT
GGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGTGACC
TCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTATCGAG
ATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGGATAA
CGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGC
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