CX043770

Overview
NameCX043770
Unique NameCX043770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 1.326e-95
Identity = 165/218 (75.69%), Postives = 193/218 (88.53%), Query Frame = -3
Query:  265 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 918
            E+++W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:   56 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.767e-91
Identity = 161/221 (72.85%), Postives = 188/221 (85.07%), Query Frame = -3
Query:  256 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPK 918
            E + W PVTKLGRLV  G + ++ +IYL SLPIKEYQIID  +   LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARVPKK+LQ+AG+DDV+TSSRG T+T+GNFV ATF  + KT+ +LTPD WRE + +K+PYQE++  L+ K
Sbjct:   45 ETKSWTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEK 263          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 7.050e-89
Identity = 155/219 (70.78%), Postives = 188/219 (85.84%), Query Frame = -3
Query:  265 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 921
            +EE++WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVR+VPAPRGAG+VAA V K+ LQ AGI+D +T SRGSTKTLGNFVKA F     TYG LTP+ W E  F ++P +EY D+L
Sbjct:   29 DEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.968e-88
Identity = 154/201 (76.62%), Postives = 178/201 (88.56%), Query Frame = -3
Query:  301 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRF 903
            +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F
Sbjct:    1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVF 201          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.599e-87
Identity = 154/219 (70.32%), Postives = 183/219 (83.56%), Query Frame = -3
Query:  265 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 921
            E+E +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L  + LKDEV+KI PVQKQT AGQRTRFKAFV +GD  GHVGLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VR++PAPRG GIV+A VPKK+L  AGI+D +T+++GST TLGNF KAT+  L +TY +LTPD W+E    KSPYQ + + L
Sbjct:   52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.197e-82
Identity = 146/219 (66.67%), Postives = 178/219 (81.28%), Query Frame = -3
Query:  265 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 918
            EE++WVP TKLGRLV+  K+ SLE+I+L S+PIKE+QI+DTLI   KL DE+MKI PVQK T AGQRTRFKAF VVGD DGH+G+G +  KEV+ AIR ++I AKL+++PVRRGYWGNKIG PHT+P KVTGKCGSV VR+VPAPRG GIVAA VPKK+L+FAG++DV+TSSRG T+T GN + ATF  L KTYGFLTPD W +T   + P  E+ +LL
Sbjct:   41 EEKEWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTHGNLIMATFYALRKTYGFLTPDLWADTEPSRDPTDEHGELL 259          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 290.426 bits (742), Expect = 9.550e-78
Identity = 141/216 (65.28%), Postives = 174/216 (80.56%), Query Frame = -3
Query:  271 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTD 918
            EE+ WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+   L+DEVM I PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR  II+AKLSVIP+RRGYWG  +G+PH++  K TGKCGSVTVR++PAPRG+GIVA+   KK+LQ AG++DV+T S G T+TL N +KA F  +  TYGFLTP+ W E     SP   Y+D
Sbjct:   31 EEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSD 245          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.914e-47
Identity = 102/207 (49.28%), Postives = 139/207 (67.15%), Query Frame = -3
Query:  307 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 921
            E E++W P T +GRLV+EG+IRSL +I+  +LPI E +I+D LIG +LK E + +  VQK T AG+  RF+  VV+G+ +G VG+G   ++++A AI  AI  AKL++IPVRR  G W      PH+VP  V GK GSV V + PAPRG G+VA    K VL+ AGI DV++ ++G T+T  NFVKAT+  L +TY F+TP  W  T
Sbjct:    7 ELEQEWQPRTYVGRLVKEGRIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDAAKVVLRLAGIRDVWSFTKGDTRTTINFVKATYNALKQTYKFVTPLDWART 213          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.719e-47
Identity = 94/200 (47.00%), Postives = 139/200 (69.50%), Query Frame = -3
Query:  316 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 909
            +W P T LGRLV EGKI+S+++++  ++PI+E +IIDTL+   LK EV+ +  VQ+QT +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++PVRRG   W    G PH++P KV GK GSV + ++PAP+G G+VA+ V K VL+ AGI DV++ S G T+T  N  KA +E L KTY F +PD W
Sbjct:    4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLLPG-LKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDVWSRSYGETRTTHNMAKAVYEALKKTYQFYSPDQW 202          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.327e-46
Identity = 100/201 (49.75%), Postives = 136/201 (67.66%), Query Frame = -3
Query:  316 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 912
            E+WVP T++GR+V+EGKI S+ +++  +LPI E +I+D L+   LK EV+ +  VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PVRRG   W    G PH+VP  V GK GSV V + PAPRG G+VA  V K VL++AGI DV+T + G T+T  NF KATF  L +TY FL P  W
Sbjct:    8 EEWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFLAPWDW 207          
The following BLAST results are available for this feature:
BLAST of CX043770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RS2_BOVIN1.326e-9575.6940S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_DICDI5.767e-9172.8540S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_SCHPO7.050e-8970.7840S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_CRIGR5.968e-8876.6240S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_CAEEL6.599e-8770.3240S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_LEIAM2.197e-8266.6740S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS2_YEAST9.550e-7865.2840S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS5_HYPBU3.914e-4749.2830S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_THEPD8.719e-4747.0030S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_IGNH44.327e-4649.7530S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13C11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13C11-F21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043770 ID=CX043770; Name=CX043770; organism=Citrus sinensis; type=EST; length=923bp
TTTTTTTAAGCCAATGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAGCTTGATCAACTTCTGTGATGACTGCCTTGTTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGTCTGTTTCTGCAC
CGGCATGATCTTCATGACCTCGTCCTTCAATTTGTGGCCGATAAGCGTGT
CGATGATTTGATACTCCTTGATTGGGAGCGAGTGGAGGTAGATTTGCTCG
AGGCTCCTGATCTTGCCTTCTCTCACCAGACGGCCGAGTTTCGTGACTGG
GACCCACTTCTCTTCTTCCTCTC
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