CX043770
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.032e-39 Identity = 85/194 (43.81%), Postives = 127/194 (65.46%), Query Frame = -3 Query: 343 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 918 ++ +WVP+T LGR+V+ G+I+S+++I PIKE +I+D + L DEV+ I VQ+ T +G+R +F+A VVVG+ DG++G G +V AI+ AI+ AK++++ VRRG W PH++P VTG GSV V + PAP+G G+V + KKVL+ AGI DV+ ++G T+T N+ KATF L T Sbjct: 4 DKSEWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINYAKATFNALKAT 196
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.300e-39 Identity = 88/193 (45.60%), Postives = 125/193 (64.77%), Query Frame = -3 Query: 343 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 915 +E+W P T+LGRLV G+I+++ + LP+KEYQI+D LI LKDEV+ I Q+ T +G+R + VVG+ +G+VG+G +KE A AI+ AI AKL++I ++RG W G+PHT+P V GK GSV+V + PAP+G G+ V K +L+ AGIDD + + G TKT N+ ATF+ L KT Sbjct: 2 DEEWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDYLIPD-LKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNYALATFDALKKT 193
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.300e-39 Identity = 86/189 (45.50%), Postives = 127/189 (67.20%), Query Frame = -3 Query: 352 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 912 ++W P T +GR+V+EG+I ++ I ++LPI E +I+D L+ L+++V+ + VQ+ ++G+R RF+A VVVG+ +G+VG+G +KEV AIR AI AK ++I V+RG W G PH++P K GKCGS + ++PAP+G G+VA V K VL AGI DV+T + G T+T NF ATFE L Sbjct: 6 DEWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNFAMATFEAL 193
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.300e-39 Identity = 91/207 (43.96%), Postives = 125/207 (60.39%), Query Frame = -3 Query: 298 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFV 912 + W P T+LG LV++G++ + + LP+KE +I+D L+ L DEV+ I VQ+ T +G+R +F+ V +G+ DG+VG +V AI+ AI +AKL++I V RG W GRPHTV K TGK GSV V ++PAPRG G+ + VL+ AGIDDV+T S G T+T NF KATF L +T P RE R V Sbjct: 5 DTWQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKATFNALRETSEARVPQHAREEREV 210
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 3.003e-39 Identity = 86/192 (44.79%), Postives = 124/192 (64.58%), Query Frame = -3 Query: 343 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 912 E+WVP T+LG+LV G+I+++ + LP+KEY+I+D L+ + LKDEV+ I Q+ T +G+R + VVVG+ DG+VGLG+ SKE A AIR A+I AKL+++ +RR G W GR HT+P V GK GSV + + PAPRG G+ V + +L AGI+D + + G TKT N+ A + L +T Sbjct: 3 EEWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKTTVNYALAVYNALKET 193
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.923e-39 Identity = 89/194 (45.88%), Postives = 125/194 (64.43%), Query Frame = -3 Query: 343 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 918 E+ W+P T+LG++V EGKI ++E+ + LPIKEYQI+D L+ L DEV+ I VQ+ T +G+R +F+ VVVG+ +G+VGL +V AIR AI AKL++I V RG W G HTVP +V G+ GS+ V ++PAPRG G+ A KKVL+ AG DV++ + G T+T NF AT++ L T Sbjct: 8 EQAAWIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.923e-39 Identity = 86/195 (44.10%), Postives = 121/195 (62.05%), Query Frame = -3 Query: 343 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 912 ++W P TKLG +V+EG+I + +I+ IKE +IID L + + EV+ I + T +G+R RF+ VG+ DG+VGLG+ KEV AIR AI AKL++I ++RG W + RPH+VP V GK GSV VR++P PRG G+V V KK+L+ AG+ DV++ + G T+T NF KA F L T Sbjct: 14 DEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNT 208
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.923e-39 Identity = 89/194 (45.88%), Postives = 125/194 (64.43%), Query Frame = -3 Query: 343 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 918 E+E WVPVT LG+ V G+ S ++I PIKE I+D ++ L DEV+ I +Q+ T +G+R +F+A VV+G+ +G+VG G +V TAI+ AI AKL+++ VRRG W G H+VP +VTGK GSV V + PAP+G G+V V KKVL AGI DV+ ++ G+T+T NF KAT+ L +T Sbjct: 4 EQEVWVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNFAKATYNALRET 196
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 5.123e-39 Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = -3 Query: 352 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 912 E W P T++GR+V+EG I + I LP+ E +I+D L+ L+++V+ + VQ+ ++G+R R++A VVVG+ +G+VG+G+ SKEV AIR AI AKLS+I VR G W G PH++P G CGSV V ++PAPRG G+VA V K VL AGI D +T + G T+T NF +ATF+ L Sbjct: 18 EAWEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.691e-39 Identity = 85/189 (44.97%), Postives = 124/189 (65.61%), Query Frame = -3 Query: 352 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 912 + W P T++GR+V+EG I + I LP+ E +I+D L+ L+++V+ + VQ+ ++G+R R++A VVVG+ +G+VG+G+ SKEV AIR AI AKLS+I VR G W G PH++P G CGSV V ++PAPRG G+VA V K VL AG+ D +T++ G T+T NF +ATF+ L Sbjct: 14 DSWEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAEATFDAL 201 The following BLAST results are available for this feature:
BLAST of CX043770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 478
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043770 ID=CX043770; Name=CX043770; organism=Citrus sinensis; type=EST; length=923bpback to top |