CX043770

Overview
NameCX043770
Unique NameCX043770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.032e-39
Identity = 85/194 (43.81%), Postives = 127/194 (65.46%), Query Frame = -3
Query:  343 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 918
            ++ +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+ I  VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VRRG   W      PH++P  VTG  GSV V + PAP+G G+V   + KKVL+ AGI DV+  ++G T+T  N+ KATF  L  T
Sbjct:    4 DKSEWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINYAKATFNALKAT 196          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.300e-39
Identity = 88/193 (45.60%), Postives = 125/193 (64.77%), Query Frame = -3
Query:  343 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 915
            +E+W P T+LGRLV  G+I+++ +     LP+KEYQI+D LI   LKDEV+ I   Q+ T +G+R  +    VVG+ +G+VG+G   +KE A AI+ AI  AKL++I ++RG   W    G+PHT+P  V GK GSV+V + PAP+G G+    V K +L+ AGIDD +  + G TKT  N+  ATF+ L KT
Sbjct:    2 DEEWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDYLIPD-LKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNYALATFDALKKT 193          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.300e-39
Identity = 86/189 (45.50%), Postives = 127/189 (67.20%), Query Frame = -3
Query:  352 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 912
            ++W P T +GR+V+EG+I  ++ I  ++LPI E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V+RG   W    G PH++P K  GKCGS  + ++PAP+G G+VA  V K VL  AGI DV+T + G T+T  NF  ATFE L
Sbjct:    6 DEWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNFAMATFEAL 193          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.300e-39
Identity = 91/207 (43.96%), Postives = 125/207 (60.39%), Query Frame = -3
Query:  298 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFV 912
            + W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V RG   W    GRPHTV  K TGK GSV V ++PAPRG G+      + VL+ AGIDDV+T S G T+T  NF KATF  L +T     P   RE R V
Sbjct:    5 DTWQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKATFNALRETSEARVPQHAREEREV 210          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.003e-39
Identity = 86/192 (44.79%), Postives = 124/192 (64.58%), Query Frame = -3
Query:  343 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 912
            E+WVP T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + LKDEV+ I   Q+ T +G+R  +   VVVG+ DG+VGLG+  SKE A AIR A+I AKL+++ +RR  G W    GR HT+P  V GK GSV + + PAPRG G+    V + +L  AGI+D +  + G TKT  N+  A +  L +T
Sbjct:    3 EEWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKTTVNYALAVYNALKET 193          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.923e-39
Identity = 89/194 (45.88%), Postives = 125/194 (64.43%), Query Frame = -3
Query:  343 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 918
            E+  W+P T+LG++V EGKI ++E+ +   LPIKEYQI+D L+   L DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V RG   W    G  HTVP +V G+ GS+ V ++PAPRG G+ A    KKVL+ AG  DV++ + G T+T  NF  AT++ L  T
Sbjct:    8 EQAAWIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.923e-39
Identity = 86/195 (44.10%), Postives = 121/195 (62.05%), Query Frame = -3
Query:  343 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 912
            ++W P TKLG +V+EG+I  + +I+     IKE +IID L   +  +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   KEV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+ AG+ DV++ + G T+T  NF KA F  L  T
Sbjct:   14 DEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNT 208          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.923e-39
Identity = 89/194 (45.88%), Postives = 125/194 (64.43%), Query Frame = -3
Query:  343 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 918
            E+E WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ VRRG   W    G  H+VP +VTGK GSV V + PAP+G G+V   V KKVL  AGI DV+ ++ G+T+T  NF KAT+  L +T
Sbjct:    4 EQEVWVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNFAKATYNALRET 196          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.123e-39
Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = -3
Query:  352 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 912
            E W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   18 EAWEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.691e-39
Identity = 85/189 (44.97%), Postives = 124/189 (65.61%), Query Frame = -3
Query:  352 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 912
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T++ G T+T  NF +ATF+ L
Sbjct:   14 DSWEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAEATFDAL 201          
The following BLAST results are available for this feature:
BLAST of CX043770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RS5_METHJ1.032e-3943.8130S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_PICTO2.300e-3945.6030S ribosomal protein S5P OS=Picrophilus torridus ... [more]
RS5_METJA2.300e-3945.5030S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_HALSA2.300e-3943.9630S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_THEAC3.003e-3944.7930S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_UNCMA3.923e-3945.8830S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_PYRFU3.923e-3944.1030S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_METLZ3.923e-3945.8830S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_METM65.123e-3946.0330S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METVS6.691e-3944.9730S ribosomal protein S5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13C11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13C11-F21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043770 ID=CX043770; Name=CX043770; organism=Citrus sinensis; type=EST; length=923bp
TTTTTTTAAGCCAATGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAGCTTGATCAACTTCTGTGATGACTGCCTTGTTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGTCTGTTTCTGCAC
CGGCATGATCTTCATGACCTCGTCCTTCAATTTGTGGCCGATAAGCGTGT
CGATGATTTGATACTCCTTGATTGGGAGCGAGTGGAGGTAGATTTGCTCG
AGGCTCCTGATCTTGCCTTCTCTCACCAGACGGCCGAGTTTCGTGACTGG
GACCCACTTCTCTTCTTCCTCTC
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