CX043770

Overview
NameCX043770
Unique NameCX043770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.199e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = -3
Query:  352 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 783
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_BACST (30S ribosomal protein S5 OS=Bacillus stearothermophilus GN=rpsE PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.199e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = -3
Query:  352 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 783
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_UREU1 (30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.402e-17
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = -3
Query:  325 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 777
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++AT   LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_UREPA (30S ribosomal protein S5 OS=Ureaplasma parvum GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.402e-17
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = -3
Query:  325 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 777
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++AT   LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_UREP2 (30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.402e-17
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = -3
Query:  325 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 777
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++AT   LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_FLAPJ (30S ribosomal protein S5 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.402e-17
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = -3
Query:  346 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 789
            G +LKD ++ +  V K T+ G+   F A VVVGD +G VG G+  SK+V+ AI  A+  AK +++ +             +VP +  GK G   V ++PA  G G++A    + VL+  GI DV + S+GS+    N VKATF+ LL+
Sbjct:   15 GLELKDRLVSVNRVTKVTKGGRAFGFSAIVVVGDENGVVGHGLGKSKDVSEAIAKAVEDAKKNLVKIPLS--------GKSVPHEQKGKFGGARVNLMPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNP-HNVVKATFDALLQ 153          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.228e-16
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = -3
Query:  352 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 783
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   10 ELEERVVAINRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  352 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 780
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VKAT   L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  352 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 780
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VKAT   L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
BLAST of CX043770 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  352 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 780
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VKAT   L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
The following BLAST results are available for this feature:
BLAST of CX043770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RS5_GEOKA7.199e-1738.8930S ribosomal protein S5 OS=Geobacillus kaustophil... [more]
RS5_BACST7.199e-1738.8930S ribosomal protein S5 OS=Bacillus stearothermop... [more]
RS5_UREU19.402e-1736.4230S ribosomal protein S5 OS=Ureaplasma urealyticum... [more]
RS5_UREPA9.402e-1736.4230S ribosomal protein S5 OS=Ureaplasma parvum GN=r... [more]
RS5_UREP29.402e-1736.4230S ribosomal protein S5 OS=Ureaplasma parvum sero... [more]
RS5_FLAPJ9.402e-1737.1630S ribosomal protein S5 OS=Flavobacterium psychro... [more]
RS5_GEOTN1.228e-1638.8930S ribosomal protein S5 OS=Geobacillus thermodeni... [more]
RS5_CLOPS2.735e-1639.8630S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOPE2.735e-1639.8630S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOP12.735e-1639.8630S ribosomal protein S5 OS=Clostridium perfringen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13C11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13C11-F21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043770 ID=CX043770; Name=CX043770; organism=Citrus sinensis; type=EST; length=923bp
TTTTTTTAAGCCAATGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAGCTTGATCAACTTCTGTGATGACTGCCTTGTTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGTCTGTTTCTGCAC
CGGCATGATCTTCATGACCTCGTCCTTCAATTTGTGGCCGATAAGCGTGT
CGATGATTTGATACTCCTTGATTGGGAGCGAGTGGAGGTAGATTTGCTCG
AGGCTCCTGATCTTGCCTTCTCTCACCAGACGGCCGAGTTTCGTGACTGG
GACCCACTTCTCTTCTTCCTCTC
back to top