DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 67/135 (49.63%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQLS 566
            LCT    +  +G+PL ++ S FHRVIP FM Q            ESIYG KF DE+   KH  P +LSMANAG  TNGSQFF+ T  T  LDGKHVVFG+V++G  VV+ +E V + +S R  + V I DCG+L+
Sbjct:   53 LCTNTSKLASTGQPLSFRNSIFHRVIPKFMIQGGDFTRADGTGGESIYGEKFQDEDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDVKIVDCGELT 187          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.966e-29
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 506
            ALCTGE G+  + K  LHYKG+  HRV+  FM Q             SIYG  F DE FV KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+V++G +VV  ++ +
Sbjct:   40 ALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          

HSP 2 Score: 38.1206 bits (87), Expect = 6.966e-29
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            +VF DM +  +P GRI ++LF    P+T ENFR
Sbjct:    7 RVFLDMALDEKPIGRIEIKLFTSEAPKTCENFR 39          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 2.606e-28
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 563
            ALCTGE G+  + K  LHYK + FHR++  FM Q             SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:   39 ALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          

HSP 2 Score: 33.8834 bits (76), Expect = 2.606e-28
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            +VF D++V     GRI + LF +  P+T ENFR
Sbjct:    6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFR 38          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.269e-27
Identity = 57/133 (42.86%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            LCTG+ G  +SG  LHY GS FHRV+     Q            ESIYG  F DENF   H   G+L M N G  +NGSQF++      +LD K+V FGQ++EG DV+  +E V + + R  +  VI   GQL
Sbjct:  173 LCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          

HSP 2 Score: 36.5798 bits (83), Expect = 1.269e-27
Identity = 13/32 (40.62%), Postives = 23/32 (71.88%), Query Frame = 2
Query:   65 VFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            VF D+++   P GR++ EL++D  P+T +NF+
Sbjct:  140 VFLDISIDLYPIGRLIFELYSDTCPKTCKNFQ 171          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.799e-27
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 557
            LCTG+ G  + G  LHYK S FHR++     Q            ESIYG  F DENF   H   G+L MAN G  +NGSQF++    T +LD K V FGQ++EG +V+K +E V + + R      I D G
Sbjct:  177 LCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSG 307          

HSP 2 Score: 38.891 bits (89), Expect = 2.799e-27
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 2
Query:   65 VFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            VF D+ +   P GR++ EL+ DV P+T +NF+
Sbjct:  144 VFLDICIDSSPIGRLIFELYCDVCPKTCKNFQ 175          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.784e-26
Identity = 56/118 (47.46%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  213 YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 563
            Y GS FHRVI  F+ Q             SIYG  F DE    +H  PG L MAN GP TNG QF+V T   +WL+GKH VFG+V+EGMD V AIE V + +      PV+I +CG++
Sbjct:   71 YVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGEM 188          

HSP 2 Score: 31.5722 bits (70), Expect = 1.784e-26
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            K++ D+    +P GRIV  LF    P+T  NFR
Sbjct:   27 KIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFR 59          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.129e-25
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  213 YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADEN--FVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGR-TNKPVVIADCGQL 563
            Y GS FHRV+  F+ Q             SIYG  F DE+     +H  PG L MAN GP TNG QF+V T   +WLDGKH VFG+V+EGMD + AIE V + +     +PVVI++CG++
Sbjct:   72 YVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEI 191          

HSP 2 Score: 31.5722 bits (70), Expect = 1.129e-25
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            +++ D+    +P GRI   LF  + P+T  NFR
Sbjct:   28 RIYMDVKHNKKPVGRITFGLFGKLAPKTVANFR 60          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.283e-23
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVK 491
            +Y G SFHR+I  FM Q             SIYG +FADE N   +HTG GILSMANAGP TNGSQFF+  A T WLDGKH +FG+V +GM+VVK
Sbjct:   40 YYDGVSFHRIIADFMIQGGDPTGTGRGGT-SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVK 133          

HSP 2 Score: 23.483 bits (49), Expect = 8.283e-23
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G I +EL+ D  PRT +NF
Sbjct:   14 GSIHIELYWDHAPRTCKNF 32          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.500e-21
Identity = 56/111 (50.45%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 539
            +Y  + FHR+IP FM Q             SI+G KF DE +   KHTG GILSMANAGP TNGSQFFV  A T WLDGKH +FG+V  GM  +K +  V   +G  ++PV
Sbjct:   38 YYDNTIFHRIIPNFMVQGGDPTGTGRGG-SSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRMGLV--KTGSEDRPV 145          

HSP 2 Score: 22.3274 bits (46), Expect = 1.500e-21
Identity = 7/19 (36.84%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G +++EL+    P+T  NF
Sbjct:   12 GSLILELYTTHAPKTCNNF 30          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL1_SCHPO (Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizosaccharomyces pombe GN=ppi1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.505e-21
Identity = 57/114 (50.00%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVI 545
            +Y G  FHRVIP F+ Q             SIYG KF DE +    HTG GILSMANAGP TN SQFF+  A T WLDGKH +FG+VV G+ V K +  + + SS R  +P+ I
Sbjct:   37 YYDGVIFHRVIPDFVIQGGDPTGTGRGGT-SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKI 149          

HSP 2 Score: 25.0238 bits (53), Expect = 1.505e-21
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G+I++EL+ +  P+T +NF
Sbjct:   11 GKILIELYTEHAPKTCQNF 29          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPID_USTMA1.333e-2949.63Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
CYP9_CAEBR6.966e-2948.28Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYP9_CAEEL2.606e-2844.85Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL6_BOVIN1.269e-2742.86Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIL6_HUMAN2.799e-2741.98Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
CYPR_CALVI1.784e-2647.46Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPR_DROME1.129e-2546.67Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL1_RHIOR8.283e-2357.89Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPIL1_GIBZE1.500e-2150.45Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPIL1_SCHPO1.505e-2150.00Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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