DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 536
            +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  527 YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          

HSP 2 Score: 21.557 bits (44), Expect = 1.644e-19
Identity = 12/33 (36.36%), Postives = 15/33 (45.45%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENF 157
            PK   D  +     G I  +LF    P+T ENF
Sbjct:  487 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF 519          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.644e-19
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 536
            +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  527 YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          

HSP 2 Score: 21.557 bits (44), Expect = 1.644e-19
Identity = 12/33 (36.36%), Postives = 15/33 (45.45%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENF 157
            PK   D  +     G I  +LF    P+T ENF
Sbjct:  487 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF 519          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.617e-19
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 536
            +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  527 YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNV-KVNPQTDKP 634          

HSP 2 Score: 22.7126 bits (47), Expect = 3.617e-19
Identity = 12/33 (36.36%), Postives = 16/33 (48.48%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENF 157
            PK   D  +     G I ++LF    P+T ENF
Sbjct:  487 PKRVSDSAIVHTSMGDIHIKLFPVECPKTVENF 519          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 539
            +Y    FHRVI GFM Q            ESI+G  F DE   + +H  P  +SMANAGP TNGSQFF+  A T WLD KH VFG+V  GMDVV +IE   +   +TNKP+
Sbjct:  512 YYDNLIFHRVIKGFMIQTGCPFGDGTGG-ESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIE--SAKVDKTNKPL 619          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.104e-19
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 539
            +Y  + FHR+I  FM Q            ESIYG KF DE   + KHTG GILSMAN+G  +NGSQFF+    T WLDGKH +FG+V  GM   K ++K+ +     +KP+
Sbjct:   39 YYDNTIFHRLIKDFMIQGGDPLGNGRGG-ESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGM---KVVQKMNAMQTNNDKPI 145          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP7_YEAST (Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccharomyces cerevisiae GN=CPR7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.045e-18
Identity = 59/157 (37.58%), Postives = 70/157 (44.59%), Query Frame = 3
Query:  165 LCTGE-KGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXES---------IYGSK--------------FADENFVKKHTGPGILSMANAG-PGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCG 557
            LC G+ K   K  + L YKG+ FHRV+  FM Q             S         IY  K              F DEN + +   P  L MAN G P TN SQFF+ T     L+GKH +FGQVV G  VV+ IE     S G     V I+DCG
Sbjct:   40 LCAGDVKSPLKDQQYLSYKGNGFHRVVKNFMIQAGDIVFGTQKDSSSSSVGKGGCSIYADKEEVKTDDESFCYGNFEDEN-LGEFVEPFTLGMANLGSPNTNNSQFFITTYAAPHLNGKHSIFGQVVHGKSVVRTIENCRVDSDGVPESDVRISDCG 195          

HSP 2 Score: 38.1206 bits (87), Expect = 1.045e-18
Identity = 15/34 (44.12%), Postives = 24/34 (70.59%), Query Frame = 2
Query:   56 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENF 157
            +P V+ D+++  +P GRIV +LF +  P+T ENF
Sbjct:    4 DPLVYLDISIDKKPIGRIVCKLFREKAPKTTENF 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.382e-18
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 539
            +Y G  FHR+IP FM Q             SIYG +FADE   + +  G GIL+MAN+GP TNGSQFF+  A T +LDGKH +FG+V  GM  ++ +E V   + + ++PV
Sbjct:   42 YYNGVIFHRIIPNFMIQGGDPTGTGRGGT-SIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAV--RTDKDDRPV 149          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus musculus GN=Ppil2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 5.325e-17
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  201 KPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 536
            K  +Y G+ FHR I  F+ Q            ES +G  F DE      HTG G+LSMAN+GP TN SQFF+      +LD KH +FG+VV G D + A+E V  S  +T++P
Sbjct:  312 KKQYYDGTIFHRSIRNFVIQGGDPTGTGTGG-ESFWGKPFKDEFRPNLSHTGRGVLSMANSGPNTNKSQFFITFRSCAYLDKKHTIFGRVVGGFDTLTAMENV-ESDPKTDRP 422          

HSP 2 Score: 26.1794 bits (56), Expect = 5.325e-17
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G + +EL  D+TP+T ENF
Sbjct:  289 GDLNLELHCDLTPKTCENF 307          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo sapiens GN=PPIL2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.922e-17
Identity = 49/113 (43.36%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  201 KPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 536
            K  +Y G+ FHR I  F+ Q            ES +G  F DE      HTG GILSMAN+GP +N SQFF+      +LD KH +FG+VV G DV+ A+E V  S  +T++P
Sbjct:  312 KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV-ESDPKTDRP 422          

HSP 2 Score: 26.1794 bits (56), Expect = 6.922e-17
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G + +EL  D+TP+T ENF
Sbjct:  289 GDLNLELHCDLTPKTCENF 307          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.168e-17
Identity = 48/106 (45.28%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXX-----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKV 506
            +Y  ++FHR IPGFM Q                  SI+G KF DE     KH   GI+SMAN+GP TNGSQFF+  AK   LD K+ VFG+V++G D  +  +EKV
Sbjct:   36 YYDNNTFHRNIPGFMIQVHEHLHTGDPTGTGKGGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLDMMEKV 141          

HSP 2 Score: 26.1794 bits (56), Expect = 7.168e-17
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G I +E+F +  P+TAENF
Sbjct:   10 GDIKIEVFCEAVPKTAENF 28          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPWD1_PONAB1.644e-1947.27Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN1.644e-1947.27Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE3.617e-1947.27Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP15_RHIOR3.638e-1949.55Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
CYPE_DICDI8.104e-1945.95Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
CYP7_YEAST1.045e-1837.58Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccha... [more]
PPIL1_CRYNE1.382e-1845.05Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
PPIL2_MOUSE5.325e-1742.48Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus ... [more]
PPIL2_HUMAN6.922e-1743.36Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo... [more]
PPIL3_RHIOR7.168e-1745.28Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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