DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 3.529e-15
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV 542
            +Y  + FHR+I  FM Q            ESI+   F+DE F+    H   G+LSMAN G  TNGSQFF+     ++LD KH +FG++V G D +  IEK+ +  G T+ P+V
Sbjct:  315 YYNNTKFHRLIKNFMLQGGDPTGTGHGG-ESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEG-TDVPMV 424          

HSP 2 Score: 22.7126 bits (47), Expect = 3.529e-15
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G + +ELFA   P+  ENF
Sbjct:  289 GPLNLELFAPKVPKACENF 307          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIB_STRCH (Peptidyl-prolyl cis-trans isomerase B OS=Streptomyces chrysomallus GN=cypB PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.162e-15
Identity = 55/126 (43.65%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  171 TGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKK-HTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV--VEGMDVVKAIEKVGSSSGRTNKPV 539
            TGEK   +      Y G+ FHRVI GFM Q                G KFADE   +   T P +L+MANAGPGTNGSQFF+  + T WL GKH +FG+V    G  VV AI     ++ RT++P+
Sbjct:   47 TGEKSTDRL-----YDGTVFHRVISGFMIQGGDPLGNGTGGP----GYKFADEFHPELGFTQPYLLAMANAGPGTNGSQFFLTVSPTAWLTGKHTIFGEVSGEAGRKVVDAIAAT-PTNPRTDRPL 162          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL3_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibberella zeae GN=CYP10 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.047e-14
Identity = 49/116 (42.24%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXX----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSGRTNKP 536
            +Y  S FHRVIP FM Q                 SI+G  F DE     +H   G+LSMAN GPGTNGSQFF+   K   LDG + VFG+V+  EG+  +  +E V     R N+P
Sbjct:   36 YYDKSPFHRVIPKFMAQTGAPATPNPPENPKGGRSIWGGAFEDEIRPALRHGARGVLSMANKGPGTNGSQFFITFDKAPHLDGLNTVFGRVIGDEGLATLAKMEAV--EVDRKNRP 149          

HSP 2 Score: 25.0238 bits (53), Expect = 1.047e-14
Identity = 12/35 (34.29%), Postives = 18/35 (51.43%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF----------RGPLHR 175
            G I +E++ +  P+TAENF          + P HR
Sbjct:   10 GDIKVEIYCESVPKTAENFLALCGSGYYDKSPFHR 44          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_MYCTU (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium tuberculosis GN=ppiA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.211e-14
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  213 YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 545
            Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.211e-14
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  213 YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 545
            Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIAD 551
            +Y+ + FHR I  FM Q            +SI+G  F DE F    KH   GI+SMAN G  TNGSQFF+     + LD KH +FG+VV G++V+ A+EKV ++S    K P+ + D
Sbjct:  311 YYRNTIFHRNIARFMIQGGDPSGTGRGG-QSIWGKPFKDE-FCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLED 425          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae GN=CYP8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIAD 551
            +YKG +FHR IP FM Q            +S++G  F DE +    H G G LSMAN G  TN SQFF     T  LD KH VFG+VVE ++V+  +E V +  S R    ++I D
Sbjct:  358 YYKGVAFHRNIPNFMIQGGDPSGSGRGG-QSVWGKYFDDEFDGPMTHNGRGTLSMANKGKNTNSSQFFFAYKPTPHLDRKHTVFGKVVENINVLSKMENVPTDGSNRPLNKILIKD 472          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.836e-14
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 506
            +Y    FHR I  FM Q            ESI+   F DE     KH   G+LSMAN G  TNGSQFF+  A    LDG H VFG+VV G+DV+  +E +
Sbjct:  321 YYNDVIFHRNIKKFMIQGGDPTGTGKGG-ESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESI 419          

HSP 2 Score: 25.0238 bits (53), Expect = 4.836e-14
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENF 157
            G I +ELF+D  P+T  NF
Sbjct:  295 GNINVELFSDKKPKTCHNF 313          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_ARATH (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.010e-14
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 506
            +Y G +FHR I  FM Q            ESI+G  F DE N    H+G G++SMAN+GP TNGSQFFV       L+ KH VFG VV G+  + A+E V
Sbjct:  379 YYNGVAFHRSIRNFMIQGGDPTGTGKGG-ESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAMENV 477          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.108e-13
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 506
            +Y G  FHR I  FM Q            ESI+G  F DE FV   KH   G +SMAN GP +N SQFF+  AK   LD K+ +FG+V++G D ++ IE +
Sbjct:   36 YYNGCIFHRNIKDFMVQTGDPTHSGKGG-ESIWGGPFEDE-FVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFDTLEEIETI 134          

HSP 2 Score: 23.483 bits (49), Expect = 1.108e-13
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:   98 AGRIVMELFADVTPRTAENF 157
            +G I +EL+ D  P+  ENF
Sbjct:    9 SGDIKIELYVDDAPKACENF 28          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CYP4_CAEEL3.529e-1540.71Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIB_STRCH4.162e-1543.65Peptidyl-prolyl cis-trans isomerase B OS=Streptomy... [more]
PPIL3_GIBZE1.047e-1442.24Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibb... [more]
PPIA_MYCTU1.211e-1444.35Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIA_MYCBO1.211e-1444.35Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL2_SCHPO1.582e-1441.88Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]
PPIL2_GIBZE2.698e-1442.24Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibb... [more]
PPIL2_RHIOR4.836e-1444.00Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPIL2_ARATH6.010e-1446.00Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arab... [more]
CYP10_CAEEL1.108e-1343.56Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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