DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_MYCLE (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium leprae GN=ppiA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.645e-13
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  213 YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 545
            Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   +T  L+ +H +FG+V   +   VV AI    +  + R  +PVVI
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGETPHLNRRHTIFGEVTDPDSQKVVDAISTTATDGNDRPTEPVVI 176          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL6_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus musculus GN=Ppil6 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.918e-12
Identity = 30/69 (43.48%), Postives = 33/69 (47.83%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSM 371
            LCTG  G  + G  LHYK S FHRV+     Q            ESIYG  F DENF   H   G+L M
Sbjct:  179 LCTGTSGFSERGTKLHYKDSIFHRVVQNGWIQGGDIVQGRGDDGESIYGPTFEDENFSIPHNKRGVLGM 247          

HSP 2 Score: 35.039 bits (79), Expect = 1.918e-12
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 2
Query:   65 VFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            V+ D+ +   P GR++ EL+ D  PRT  NF+
Sbjct:  146 VYLDICIDLSPIGRLIFELYCDACPRTCTNFQ 177          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL3_USTMA (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ustilago maydis GN=CYP10 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.549e-12
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 3
Query:  213 YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 482
            Y    +HR I  FM Q            +SI+G  FADE     K    GI++ ANAGP TN SQFF+  AK   LDGK+ + G+V++G +
Sbjct:   37 YNDVKWHRNIKSFMIQTGDPTGTGKGG-QSIWGKPFADEIRSSLKFDRRGIVACANAGPDTNKSQFFITYAKQPHLDGKYTIIGKVIDGAE 126          

HSP 2 Score: 30.4166 bits (67), Expect = 2.549e-12
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  101 GRIVMELFADVTPRTAENFRG 163
            G I +E+F D TPR AENF G
Sbjct:   10 GDIKVEVFCDATPRAAENFLG 30          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL3_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neurospora crassa GN=cyp-10 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 41/92 (44.57%), Postives = 50/92 (54.35%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXX----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV 470
            +Y  S FHR+IP FM Q                 SIYG  F DE   V +H   GI+SMAN GP TNGSQFF+   K   LDG + VFG+++
Sbjct:   36 YYNASPFHRMIPSFMVQTGAPANPSPPENPKGGRSIYGPTFEDEIRPVLRHNERGIVSMANKGPNTNGSQFFILFDKAPHLDGLNTVFGKLI 127          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_USTMA (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Ustilago maydis GN=CYP8 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  192 KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE---NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD--VVKAIEKVGSSSGRTNKPV 539
            K GK   Y  + FHR IPGFM Q             SI+ S F DE       KH   G+LSMAN G  TN SQFF+       LDGKH VFG++V+G     +  +E+V S  G T++P+
Sbjct:  325 KHGK---YDDTLFHRNIPGFMIQGGDPTGTGRGG-SSIWNSNFRDEFNEPGAFKHDTRGVLSMANKGKDTNASQFFITYRGVPHLDGKHTVFGRLVDGDKDATLTKMEQVPSEQG-TDRPL 440          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 45/117 (38.46%), Postives = 59/117 (50.43%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKVGS-SSGRTNKPVVIAD 551
            +Y+  +FHR I  FM Q             SI+G  F DE      H+  GI+SMAN G  TN SQFF+       LD KH +F +V+EG D  + A+E V +  S R    +VI D
Sbjct:  365 YYRDVAFHRSIRNFMIQGGDPSGTGRGG-SSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKD 480          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPR_YEAST (Peptidyl-prolyl cis-trans isomerase CPR4 OS=Saccharomyces cerevisiae GN=CPR4 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.687e-11
Identity = 43/115 (37.39%), Postives = 57/115 (49.57%), Query Frame = 3
Query:  159 AALCTGEKGI--GKSGKPLH---YKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK--TEWLDGKHVVFGQVVEGMD 482
            A L  G K +  GK    +H   Y+ +  ++V P    Q             ++YG KF DENF  KH  P  L+MA  GP +N S+F + T     E LDGK VVFGQ+  G+D
Sbjct:   85 AMLAHGVKAVIEGKDPNDIHTYSYRKTKINKVYPNKYIQGGVVAPDVGPF--TVYGPKFDDENFYLKHDRPERLAMAYFGPDSNTSEFIITTKADGNEELDGKSVVFGQITSGLD 197          

HSP 2 Score: 23.0978 bits (48), Expect = 5.687e-11
Identity = 9/30 (30.00%), Postives = 13/30 (43.33%), Query Frame = 2
Query:   68 FFDMTVGGQPAGRIVMELFADVTPRTAENF 157
            +FD          +  EL+  V P+T  NF
Sbjct:   55 YFDPVSKSMKEADLTFELYGTVVPKTVNNF 84          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 467
            +Y  + FHRV+PGF+ Q            ESIYG+ F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   48 YYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  210 HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 467
            +Y  + FHRV+PGF+ Q            ES+YG+ F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:   48 YYDNTIFHRVVPGFIVQGGDPTGTGTGG-ESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIA_MYCLE6.645e-1341.74Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL6_MOUSE1.918e-1243.48Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus ... [more]
PPIL3_USTMA2.549e-1240.66Peptidyl-prolyl cis-trans isomerase-like 3 OS=Usti... [more]
PPIL3_NEUCR5.625e-1244.57Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neur... [more]
PPIL2_USTMA1.253e-1141.32Peptidyl-prolyl cis-trans isomerase-like 2 OS=Usti... [more]
PPIL2_NEUCR2.792e-1138.46Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
CYPR_YEAST5.687e-1137.39Peptidyl-prolyl cis-trans isomerase CPR4 OS=Saccha... [more]
SDC10_MOUSE6.220e-1141.38Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
SDC10_RAT8.123e-1140.23Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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