DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.080e-20
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 3
Query:   69 INKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            + ++L +L K+P    SAG + D D++ W+  I+GP D+ + GGVF   + FP DYP +PPK+ F
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKF 74          

HSP 2 Score: 56.6102 bits (135), Expect = 2.080e-20
Identity = 24/75 (32.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 447
            +T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ DR
Sbjct:   75 ITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-20
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A G
Sbjct:   80 LTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQG 158          

HSP 2 Score: 50.447 bits (119), Expect = 2.682e-20
Identity = 23/66 (34.85%), Postives = 35/66 (53.03%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +++ KE+  L  DPP      P  +D+   Q  I GP  +P+AGG+F + +    D+P  PPK  F
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYF 79          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.682e-20
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T  +A G
Sbjct:   80 LTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQG 158          

HSP 2 Score: 51.2174 bits (121), Expect = 2.682e-20
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +R+ KE+  L  DPP      P  +D+   Q  I GP  +P+AGG+F + +    D+P  PPK  F
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYF 79          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.511e-20
Identity = 28/84 (33.33%), Postives = 45/84 (53.57%), Query Frame = 3
Query:    9 QTQTLRPQSLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            Q +  R  +  +     SKR+ +EL+ L        +A P  D++F W AT+ GP D+ +    + +++ FP DYP+KPP V F
Sbjct:   15 QKERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKF 98          

HSP 2 Score: 59.3066 bits (142), Expect = 3.511e-20
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 435
            T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+
Sbjct:  100 TPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 156          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.903e-20
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A
Sbjct:   80 LTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          

HSP 2 Score: 50.447 bits (119), Expect = 5.903e-20
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +++ KE+  L  DPP      P  +D+   Q +I GP  +P+AGG+F + +    D+P  PPK  F
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYF 79          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.689e-19
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + A+  T+ +A G
Sbjct:   80 LTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQG 158          

HSP 2 Score: 48.9062 bits (115), Expect = 1.689e-19
Identity = 23/66 (34.85%), Postives = 34/66 (51.52%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +R+ KE+  L  DPP      P  +D+   Q  I GP  +P+A G+F + +    D+P  PPK  F
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYF 79          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.708e-19
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 3
Query:   51 QMASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            + +S  + K+L D+++ P    SAG V D D++ W+  ++GP D+ + GG F   + FP DYP KPPK+ F
Sbjct:    2 EQSSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKF 72          

HSP 2 Score: 56.225 bits (134), Expect = 1.708e-19
Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            +++++HPNI+  G++C+ IL             +E+W P  T+  +LLS+ S+LTDPN + P   + A M + + A+++
Sbjct:   73 ISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.210e-19
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 435
            T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:  106 TCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW 162          

HSP 2 Score: 58.151 bits (139), Expect = 2.210e-19
Identity = 32/85 (37.65%), Postives = 42/85 (49.41%), Query Frame = 3
Query:   27 PQSLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            P +   +S    KR+  EL  L        SA P  D++F W+ TI G  D+ F G  + +S+ F  DYPFK PKV F    F P
Sbjct:   27 PPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHP 111          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            + KRI +E+ +L  DPP  CSAGP  D+++HW ATI+GPS +P+ GG+F + I FP DYPFKPPK+ F+
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFK 105          

HSP 2 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  193 GVYFL-------YPFISHLIIHSSHRRWPSVTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            G++FL       YPF    ++          T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TDR K++  A+ WT ++A
Sbjct:   83 GIFFLDIIFPSDYPFKPPKLVFK--------TRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 3.710e-19
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQ 483
            +TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+
Sbjct:   80 LTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          

HSP 2 Score: 51.2174 bits (121), Expect = 3.710e-19
Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 3
Query:   69 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            + KE+  L  DPP      P  +D+   Q TI GP  +P+AGG+F + +    D+P  PPK  F
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYF 79          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UB2G1_MACFA2.080e-2041.54Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBE2S_XENTR2.682e-2040.51Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UB2SB_XENLA2.682e-2040.51Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2C_SPISO3.511e-2033.33Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2S_RANCA5.903e-2041.56Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UB2SC_XENLA1.689e-1939.24Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC7_CAEEL1.708e-1939.44Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC19_ARATH2.210e-1947.37Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
COP10_ARATH3.657e-1955.07Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBE2S_HUMAN3.710e-1940.54Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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