DC900337

Overview
NameDC900337
Unique NameDC900337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900337 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:  151 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 414
            +K  ++K  VVVDF A WCGPCR IAP L +LA +    L + KV+ D+    A+   ++ +PT +  K+G+ V ++VGA+ E + + I
Sbjct:   14 EKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREI 102
[Close]
BLAST of DC900337 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 31/100 (31.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:  124 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 420
            T+  ++++++ +++  +L+V+DF A+WCGPC+ +   +  LA+K  +  + LK+DVD+ + +   + V +MPTF+FL++ + +    GA + +L   +AK
Sbjct:    6 TMNDYHKRIEAADD--KLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNMMAK 103
The following BLAST results are available for this feature:
BLAST of DC900337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO_CHLAA5.412e-1139.33Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO1_DROME7.068e-1131.00Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]

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Properties
Property NameValue
Genbank descriptionDC900337 VSS Citrus sinensis cDNA clone VS28688 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900337 ID=DC900337; Name=DC900337; organism=Citrus sinensis; type=EST; length=638bp
AATCACCAAGCAGCAAGAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGT
GGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAG
AGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTC
CAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTC
ATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCA
AGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAG
AGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCT
GAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAAC
TGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTT
ATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATAT
GCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGT
TTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGT
GGTCTTTACAATAATTTAATTTCATATTTGTTGTTAAC
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