DC900335

Overview
NameDC900335
Unique NameDC900335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.372e-24
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNR--KANLDTMWLETMMALIGEQFDEVDEICGELLLVYARGRTN 460
            H L   WT W+    + K   +W     ++ +FDTVE+FW LY  I  PS + + +D+ LFK  I P WED     GG+W +T N+  K +LD +WL+ ++ LIGE FD  D+ICG ++ +  RG++N
Sbjct:   81 HPLMNVWTLWYLENDRSK---SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINI--RGKSN 203          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E5_CAEEL (Eukaryotic translation initiation factor 4E-5 OS=Caenorhabditis elegans GN=ife-5 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 2
Query:   80 LHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEVDEICGELLLVYARG 451
            ++ L+R W++WF N  +    A+W   ++KVYTF+TV EFW  YE I  PS L    D+++F+  I+PKWE PE  +GG+W +  N+      LD +WLE ++ALIGEQF  +++ ICG +  V  +G
Sbjct:    8 IYPLQRNWSWWFLNDDR---NASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQG 132          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E1_CAEEL (Eukaryotic translation initiation factor 4E-1 OS=Caenorhabditis elegans GN=ife-1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 52/128 (40.62%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   80 LHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEVDEICGELLLVYARG 451
            ++ L+R WT+W+ N  + K   +W   ++KVYTF+TV EFW LY+ I  PS L    D+++F+  I+P WE PE +NGG+W +  ++      +D +WLE +MAL+GEQF  +++ ICG +  V  +G
Sbjct:   11 IYPLKRNWTWWYLNDERNK---SWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKG 135          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E1_SCHPO (Eukaryotic translation initiation factor 4E-1 OS=Schizosaccharomyces pombe GN=tif451 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.660e-24
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN--LDTMWLETMMALIGEQFDEV-DEICGELL 433
            H L R WT WF  +  P  G  W    + + TF++VEEFW ++  I   S LP+ +D+  F+ G+ P+WED     GGKW+  +  +    LD MWL T++A IGE  D    E+ G ++
Sbjct:   38 HPLARPWTLWF--LMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVI 155          

HSP 2 Score: 36.1946 bits (82), Expect = 4.660e-24
Identity = 16/44 (36.36%), Postives = 30/44 (68.18%), Query Frame = 1
Query:  409 G*DLWGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 540
            G ++ GVV ++R+   +LA+WTK+  N    M IG ++K++L++
Sbjct:  147 GQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNL 190          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-VDEICGELLLVYARG 451
            H L+  W  WF    K +    W  ++R + TFDTVE+FW LY      S+L    D+ +FK GI+P WED +   GG+W +  N   R+ +LD  WLET++ LIGE FDE  +EICG  + +  +G
Sbjct:   35 HPLQNSWAMWFFKNDKSRD---WKDNLRVITTFDTVEDFWGLYNHTLPASKLQSGCDYSVFKAGIQPMWEDAQNKKGGRWLINLNKTQRQTHLDDFWLETLLCLIGEGFDEHSEEICGATVNIRNKG 158          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_CAEEL (Eukaryotic translation initiation factor 4E-2 OS=Caenorhabditis elegans GN=ife-2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.891e-24
Identity = 51/128 (39.84%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   80 LHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEVDEICGELLLVYARG 451
            ++KL+R WT+W+ N  + K   +W   ++ V TF +V EFW L++ I  PS L   +D+++F+ GIEP WE P+  NGG+W +T  +      +DT+W E +MA+IGEQF D+++ +CG +  V  +G
Sbjct:   16 VYKLKRNWTWWYLNDERNK---SWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDYNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKG 140          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4EB_DANRE (Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.981e-23
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDEVD-EICGELLLVYARG 451
            H L+ +W  WF    K K    W  ++R +  FDTVE+FW LY  I  PS+L    D+ +FK GIEP WED     GG+W +T    +R   LD  WLET++ LIGE F     +ICG ++ + A+G
Sbjct:   34 HPLQNRWGLWFYKNDKSKM---WQDNLRLITKFDTVEDFWGLYNNIQLPSKLSSGCDYSMFKDGIEPMWEDRSNKCGGRWLITLAKQHRHTELDHFWLETLLCLIGEGFSSFSRDICGSVINIRAKG 157          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E_YEAST (Eukaryotic translation initiation factor 4E OS=Saccharomyces cerevisiae GN=TIF45 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.412e-23
Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRK-ANLDTMWLETMMALIGEQFDEVD-EICGELLLVYARGRTNLPYGPRQQQMKLLR 502
            H L  KWT W+   +  K   +W   +R V +F TVEEFW + + I +P  LP+ +D+H+F+  + P+WED   A GGKWS     K A++D +WL T++A+IGE  DE D +I G +L +   G     +   + +  LLR
Sbjct:   37 HPLNTKWTLWYTKPAVDKS-ESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPLLR 177          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: I4E1B_HUMAN (Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 5.763e-23
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = 2
Query:   77 QLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDEVD-EICGELLLVYARG 451
            +LH L+ +W  WF    K  +  AW  ++  V   DTVE+FW LY  I   S+L    D+ LFK GI+P WED     GG+W V+     R   LD +WLET++ LIGE F+E   E+CG ++ +  +G
Sbjct:   60 ELHPLQNRWALWF---FKNDRSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSRNKRGGRWLVSLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKG 185          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.830e-23
Identity = 54/135 (40.00%), Postives = 77/135 (57.04%), Query Frame = 2
Query:   62 VPPQSQL-HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQFDEV-DEICGELLLVYARG 451
            VPP+    H L+ +W  W+    + K+   W   ++ V  FDTVE+FW LY  I     L   +D++LFK GI+P WED     GG+W V  +++     LD  WLE +MA++GEQFDE  D ICG ++ V  +G
Sbjct:   24 VPPELLTRHPLQNRWALWYLKADRNKE---WEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKG 155          
The following BLAST results are available for this feature:
BLAST of DC900335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E_DROME1.372e-2439.84Eukaryotic translation initiation factor 4E OS=Dro... [more]
IF4E5_CAEEL2.340e-2442.19Eukaryotic translation initiation factor 4E-5 OS=C... [more]
IF4E1_CAEEL3.991e-2440.63Eukaryotic translation initiation factor 4E-1 OS=C... [more]
IF4E1_SCHPO4.660e-2437.50Eukaryotic translation initiation factor 4E-1 OS=S... [more]
IF4E_APLCA6.807e-2440.94Eukaryotic translation initiation factor 4E OS=Apl... [more]
IF4E2_CAEEL8.891e-2439.84Eukaryotic translation initiation factor 4E-2 OS=C... [more]
IF4EB_DANRE1.981e-2341.73Eukaryotic translation initiation factor 4E-1B OS=... [more]
IF4E_YEAST4.412e-2338.03Eukaryotic translation initiation factor 4E OS=Sac... [more]
I4E1B_HUMAN5.763e-2340.31Eukaryotic translation initiation factor 4E type 1... [more]
IF4E3_CAEEL9.830e-2340.00Eukaryotic translation initiation factor 4E-3 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionDC900335 VSS Citrus sinensis cDNA clone VS28685 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900335 ID=DC900335; Name=DC900335; organism=Citrus sinensis; type=EST; length=545bp
AAACAAAGAAGAGAGAGATATGGCAACAAGTGAGGAGGCAAGCGCGACGG
CGGCGGCGGAGGTGCCGCCGCAATCACAGCTGCACAAGCTCGAGAGAAAA
TGGACGTTTTGGTTCGACAACATATCAAAGCCCAAACAGGGCGCCGCGTG
GNGCTCCTCTATGCGCAAAGTCTACACCTTCGACACTGTCGAAGAATTTT
GGTGTTTGTATGAACAGATATTCAAGCCAAGCCGGTTGCCAATGAATGCG
GATTTCCATTTGTTCAAAACTGGGATAGAACCAAAGTGGGAAGATCCTGA
GTGTGCAAATGGAGGAAAGTGGTCGGTCACTAGCAACAGGAAGGCTAACC
TTGATACCATGTGGCTTGAAACAATGATGGCCCTGATTGGAGAGCAATTT
GATGAGGTGGATGAGATTTGTGGGGAGTTGTTGCTAGTGTACGCCAGAGG
CAGGACAAACTTGCCTTATGGACCAAGACAGCAGCAAATGAAGCTGCTCA
GATGGGCATTGGAAAGAAGTGGAAGGAGATCCTTGATGTCACTGA
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