CX043703

Overview
NameCX043703
Unique NameCX043703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043703 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 55/155 (35.48%), Postives = 82/155 (52.90%), Query Frame = -2
Query:  188 RPLGDAVLDGIDFDIEGGSNQYWDELARALSNFSQQ---KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFYNNPPC---QYSGNADNFKNSWNQWTSNLFGFG----QVFLGLPGSPEAAG-SGYIPPDVLTFQVLPAIKNSPK-YGGVMLW 616
            RP G+A +DG DFDIE GSN  +  + R L     Q    + Y++AAPQC  PD +L  A+    FD++++QFYNNP C   ++  N  +   + + W   +   G    ++F+GLP S  AA    Y+ P   T  V   +   P  +GG+M+W
Sbjct:  160 RPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNNPSCSAKRWVTNPKSVTYTVDDWVKYIRKSGNPLAKLFIGLPASKSAAAKEDYLTPGEATKIVSTYMAKYPSTFGGMMVW 314          
BLAST of CX043703 vs. ExPASy Swiss-Prot
Match: XIP1_WHEAT (Xylanase inhibitor protein 1 OS=Triticum aestivum GN=XIPI PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.608e-16
Identity = 58/177 (32.77%), Postives = 96/177 (54.24%), Query Frame = -2
Query:  149 WDHFLGGQSSS--RPLGDAVLDGIDFDIEGGSN-QYWDELARALSNFSQQ----KKVYLAAAPQCPYPDA-WLGGALGTGLFDYVWVQFYNNPPCQYSGNADNFKNSWNQWTSNLFGFGQVFLGLPGSPEAAGSGYIPPDVLTFQVLPAIKNSPKYGGVMLWFRQYDK--SYSSAIK 649
            W+ + GG   S  RP GDA LDG+D  +E G+    +D LA  L+  + +    K ++L A  +C YP A  +G AL TG+F+ V V+ Y +   ++      ++ SW++WT+  +   + ++GL    ++    ++ P  + + V P  +    YGG+MLW R +DK  +YSS IK
Sbjct:  130 WNSYFGGSKPSVPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATGIFERVHVRTYESD--KWCNQNLGWEGSWDKWTA-AYPATRFYVGLTADDKS--HQWVHPKNVYYGVAPVAQKKDNYGGIMLWDRYFDKQTNYSSLIK 301          
BLAST of CX043703 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = -2
Query:  122 WDHFLGGQSSSRPLGDAVLDGIDFDIEGGSNQYWDELARALSNF---SQQKKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFYNNPPCQ-YSGNADNFKNSWNQWT--SNLFGFGQVFLGLPGSPEAAGSGYIPPDVLTFQVLPAIKNSPKYGGVMLWFRQY-DKSYSSAIKSSV*TIHHI 649
            W+ F  G+ S RP G AV+DG D ++  G+N  +   A+ +        ++K Y++AAP C  PD  L  A+    FD++ +  +N+   +  SG+ ++  ++W ++   S       +F G+ G  +   +G+I P  LT  +L    NS  +GGV +W       SY ++ ++ V  IH I
Sbjct:  140 WNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNSSTGEGCSGSRNSTFDAWVEYAEDSAYNTNTSLFYGVVGH-QNGSNGFISPKNLTRDLLNYKANSTLFGGVTIWDTSLAAMSYDNSSETFVEAIHKI 321          
The following BLAST results are available for this feature:
BLAST of CX043703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CHI2_COCIM1.634e-1835.48Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
XIP1_WHEAT2.608e-1632.77Xylanase inhibitor protein 1 OS=Triticum aestivum ... [more]
YKT4_SCHPO4.164e-1428.96Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12H10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12H10-O20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043703 ID=CX043703; Name=CX043703; organism=Citrus sinensis; type=EST; length=650bp
TTTTTTTTTTTTTTTTTACATGCCAAAGCTATTGCTCTAAATTTATTGCG
TGTGATTATACAATATTCTTATTTCATGTAAATTTATTAATTATTTTAAG
GTGAAAAAAATATTCTCAGGTAATATGGTGTATGGTTCAAACACTGGATT
TAATAGCTGAGCTATAACTCTTGTCATACTGCCTAAACCAAAGCATGACT
CCTCCGTATTTTGGGGAATTCTTAATAGCCGGCAAAACCTGAAATGTAAG
CACATCAGGGGGAATATAGCCGCTCCCGGCTGCTTCAGGAGACCCTGGCA
ATCCCAAAAATACTTGGCCAAAACCAAATAGATTTGATGTCCATTGATTC
CAACTGTTCTTGAAATTATCCGCATTGCCGGAATACTGACAAGGAGGATT
GTTATAGAATTGGACCCAAACGTAATCAAATAAGCCAGTTCCTAGTGCAC
CGCCAAGCCATGCATCAGGGTACGGACATTGTGGAGCTGCTGCTAAGTAA
ACCTTCTTCTGTTGGCTAAAATTTGACAAGGCCCTGGCTAGTTCGTCCCA
GTATTGGTTTGAGCCTCCCTCAATATCGAAATCGATTCCATCTAAAACTG
CATCACCTAAGGGCCGGGAGCTTGATTGGCCTCCAAGAAAATGGTCCCAC
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