DC900327

Overview
NameDC900327
Unique NameDC900327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.587e-32
Identity = 56/95 (58.95%), Postives = 81/95 (85.26%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            K G  T++++DF  SLP  +CRYA+YD+DFVT ENCQKS+IFF+AWSP  +R+R+KM+YA+SK+RF+RELDG+  E+QATDPSE+ +++ ++RA+
Sbjct:   51 KTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.527e-32
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            K G  T++Y+DF ASLP  +CRYA+YD+DFVT EN QKS+IFFIAWSP T+R+R+KM+Y++SKDR K+ELDG   E+QATDP+E+ L+V ++RA+
Sbjct:   51 KTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.372e-31
Identity = 59/93 (63.44%), Postives = 78/93 (83.87%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            K+G+ T +YEDF +SLP  +CR+A+YD+DF+TAE+  KSRIF+I WSPD A+VRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD  KDR
Sbjct:   45 KIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.854e-30
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            K G P ++Y+DF ASLPA++CRYAVYD DFV+ +NC+KS+IFFI+WSP  +R+R+K IYA S+++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   55 KTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.569e-29
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            ++G+   +Y+DF  SLP  +CRYA+YD+DFVTAE+ QKSRIF+I WSP +A+V+SKM+YASS  +FK  L+GIQVELQATD SE+ LD  KDRA
Sbjct:   45 QVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.050e-29
Identity = 54/94 (57.45%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            K+G   ++Y D   SLP ++CRYAV+D+DFVT +NC+KS+IFFIAWSP+ +++R+K++YA+SKD  +R L+GI  ELQATDP+EMG D+ +DRA
Sbjct:   49 KVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.566e-29
Identity = 54/94 (57.45%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            K+G   ++Y+D AASLP ++CRYAV+D+D+VT +NC+ S+IFFI WSP+ +R+R KM+YA+SK   +R LDG+  ELQATDP+EMG D  +DRA
Sbjct:   36 KVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.566e-29
Identity = 55/94 (58.51%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            K+G P + YE+  A+LP ++CRYAV+D+DFVT +NCQKS+IFFIAWSP  +R+R+K++YA+SK   +R LDG+  E+QATD SEMG DV + RA
Sbjct:   49 KVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.345e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    8 GEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            GE  Q+YE+FA SLPA+ECRYA+ D +FV  E     +I FIAWSP TA++R KMIY+S+KDRFKRELDGIQVE  ATD +++ LD  + R N
Sbjct:   45 GEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 51/95 (53.68%), Postives = 72/95 (75.79%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            K G P ++Y+DF ASLPA+    AVYD DFV+ +NC+KS+IFFI+WSP  + +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   54 KTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
The following BLAST results are available for this feature:
BLAST of DC900327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADF11_ORYSJ2.587e-3258.95Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ7.527e-3262.11Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF4_ORYSJ6.372e-3163.44Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF10_ORYSJ1.854e-3058.95Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF3_MAIZE1.569e-2962.77Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF5_ARATH2.050e-2957.45Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF9_ARATH4.566e-2957.45Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF5_ORYSJ4.566e-2958.51Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF11_ARATH2.345e-2560.22Putative actin-depolymerizing factor 11 OS=Arabido... [more]
ADF8_ORYSJ3.387e-2453.68Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionDC900327 VSS Citrus sinensis cDNA clone VS28677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900327 ID=DC900327; Name=DC900327; organism=Citrus sinensis; type=EST; length=510bp
AAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTC
CTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGGGGTGGAAGTT
ATGGGGATGA
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