DC900327

Overview
NameDC900327
Unique NameDC900327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.524e-16
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAE-NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 265
            Y+ F   LP  +CRYAVYD+++   + + ++++I F  WSPDTA VR+KM+YASSKD  +R L+GI  E+Q TD SE+  +
Sbjct:   50 YDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYE 130          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 265
            Y+ F   LP ++C YAVYD+++ ++    ++S+I F  WSPDTA +RSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:   50 YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            ++ F   LP ++CRYA+YD++F   E   +++I FI+WSPD A ++SKM+Y+SSKD  +R   GI  ++QATD SE+  +   ++
Sbjct:   50 FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.562e-16
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   23 TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            ++++F   LP  ECRY V DY +   E  QKS+I F+AW PDTA ++ KM+  SSKD  ++   GIQVE+Q TD SE+    F ++
Sbjct:   49 SFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEVKDSCFYEK 133          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 256
            T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   65 TDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 256
            T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   65 TDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 256
            T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   65 TDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 7.078e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 256
            T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   65 TDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 7.078e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 256
            T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   65 TDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 7.078e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEM 256
            T  ++ F   LP ++CRYA+YD  F T E+ +K  + F  W+P+ A ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   65 TDPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
The following BLAST results are available for this feature:
BLAST of DC900327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COFI_PICAN1.524e-1648.15Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_ASHGO3.394e-1645.68Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COFI_SCHPO5.790e-1642.35Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COF1_DICDI7.562e-1645.35Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
DEST_PIG5.419e-1443.75Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN5.419e-1443.75Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN5.419e-1443.75Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT7.078e-1443.75Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_MOUSE7.078e-1443.75Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
DEST_CHICK7.078e-1443.75Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC900327 VSS Citrus sinensis cDNA clone VS28677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900327 ID=DC900327; Name=DC900327; organism=Citrus sinensis; type=EST; length=510bp
AAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTC
CTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGGGGTGGAAGTT
ATGGGGATGA
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