DC900327

Overview
NameDC900327
Unique NameDC900327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.059e-13
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    5 LGEPTQT-YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            +GE  Q  Y  F   LP ++CRY +YD  + T E+ +K  + FI W+PD A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR
Sbjct:   60 IGEAVQDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.513e-13
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            Y  F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:   68 YTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            Y  F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:   68 YTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            Y  F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:   68 YTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            Y  F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:   68 YTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of DC900327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COF2_XENLA2.059e-1345.16Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF1_RAT2.690e-1347.56Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN2.690e-1347.56Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF1_MOUSE3.513e-1347.56Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
COF2_PIG4.588e-1345.35Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE4.588e-1345.35Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN4.588e-1345.35Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN4.588e-1345.35Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1_SHEEP4.588e-1347.56Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG4.588e-1347.56Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC900327 VSS Citrus sinensis cDNA clone VS28677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900327 ID=DC900327; Name=DC900327; organism=Citrus sinensis; type=EST; length=510bp
AAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTC
CTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGGGGTGGAAGTT
ATGGGGATGA
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