DC900327

Overview
NameDC900327
Unique NameDC900327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 238
            +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:   57 VGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            Y  F   LP ++CRY +YD  + T E+ +K  + FI W+PD A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR
Sbjct:   68 YRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 2
Query:   11 EPTQTYEDFAASLPAEECRYAVYDYDFV-----TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            E  Q  ED     P E CRY ++D++++     T+E+ +K ++F ++W PDTA+V+ KM+Y+SS D  K+ L G+Q  +QATD SE   +  +++
Sbjct:   48 EYDQFLEDIQKCGPGE-CRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            Y  F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:   68 YTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 25/87 (28.74%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   20 QTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 280
            +++ED+    P ++CRY VYD+ ++  +  +K++IFFI+W P   ++++K+++ +++    ++L GI   ++ATD +E+   + ++R
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.476e-11
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   65 RYAVYDYDFVTAENCQ-KSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 265
            RYAVYD+++  A     +++I FIAWSPD A ++ KMIYASSK+  KR L GI  ELQA D  ++  D
Sbjct:   65 RYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 235
            Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  K+ L GI+ E Q
Sbjct:   68 YKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 235
            Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  K+   GI+ E Q
Sbjct:   68 YKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of DC900327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COF1_MACFA4.588e-1347.56Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN4.588e-1347.56Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF2_XENTR5.992e-1345.88Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
CADF_DROME5.992e-1337.89Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF2_CHICK7.825e-1345.35Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF4_DICDI8.652e-1228.74Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
COFI_GIBZE1.476e-1151.47Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF1A_XENLA2.517e-1147.14Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF1_XENTR9.566e-1145.71Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC900327 VSS Citrus sinensis cDNA clone VS28677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900327 ID=DC900327; Name=DC900327; organism=Citrus sinensis; type=EST; length=510bp
AAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTC
CTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGGGGTGGAAGTT
ATGGGGATGA
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