DC900317

Overview
NameDC900317
Unique NameDC900317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.088e-34
Identity = 70/156 (44.87%), Postives = 96/156 (61.54%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLKD+R+ QH PT +PTSE++S+G I F  +DLGGH  ARRVWK                  ER  ES+             +VP L+LGNKID P A SE++L++ L + +  TGKG V+  +   RP+EVFMCS++++ GYG+G +WL QY+
Sbjct:   38 LHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 79/156 (50.64%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+WK                  ER AESK              VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYG+GFKWLS +I
Sbjct:   37 LHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPEGQ-RPIEVFMVSVVMRMGYGEGFKWLSSFI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 80/156 (51.28%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+WK                  ERF E++             NVPF VLGNKID P A SE ELR  LGL N TTG  K+       RP+E+FMCS+V K GY + FKWLS+YI
Sbjct:   40 LHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCSVVMKSGYSEAFKWLSEYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.737e-32
Identity = 77/156 (49.36%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+WK                  ERF E++              VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+E+FMCS+V K GY + F+WLSQYI
Sbjct:   40 LHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARI----EGQRPVELFMCSVVMKSGYLEAFQWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.964e-32
Identity = 77/156 (49.36%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+WK                  ERF E++             +VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:   40 LHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.279e-31
Identity = 75/156 (48.08%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+WK                  +RF E++             +VPF++LGNKID   A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:   39 LHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 65/156 (41.67%), Postives = 87/156 (55.77%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            L MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W+                   RF ES++              P L+L NK+DI  A S E +    G+ +  TGKG  NL  S+ RPLEVF CS++ + GY DGFKWLS+Y+
Sbjct:   37 LAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLR-SDQRPLEVFPCSVINRFGYTDGFKWLSKYL 191          
The following BLAST results are available for this feature:
BLAST of DC900317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1_CAEEL1.088e-3444.87GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_PICGU1.203e-3350.64Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_KLULA1.203e-3351.28Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_ASHGO1.737e-3249.36Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_YEAST2.964e-3249.36Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA4.279e-3148.08Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA1.522e-2841.67GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]

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Properties
Property NameValue
Genbank descriptionDC900317 VSS Citrus sinensis cDNA clone VS28666 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900317 ID=DC900317; Name=DC900317; organism=Citrus sinensis; type=EST; length=817bp
GCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGT
ATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTT
GATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGC
GATNGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGT
TTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTG
GCCAATGTTCCCTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGC
TGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCA
CTGGGAAGGGGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAG
GTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAA
ATGGCTCTCTCAATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGA
AGTAATGCAGATTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCAC
CAAAAAAAAATTGTGTTTATCTACTTGTTTGATCTTTTAGTCTGTTAGTG
GGACTTGAACCAGAGGTACTGTGTTTTGAGTCTGTTTGGAAGGTGGTAGT
TATGTTACTGCTCTGTAAAATTTACTTGTGGATAGCAGGTCATTATCTGG
TATTGTAGTTTTGTCAAATTACTTGCACCTATTGTCATGTTCTGCTGTGG
AGCAGATATTAGAATTATTATTTGTTATTATTTTGTTAAGGGTTAATTTC
AAGTTCAAAACATCCCT
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