DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF2_XENLA (E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.217e-23
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  324 SPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 599
            S +++WFW+ V+ F +E +ARLLQFVTG+S+VPL+GF ALQG +G + F IH+   S ++LP AHTCFN++D P Y + + L E+LL AI E
Sbjct:  653 SNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDASTNNLPKAHTCFNRIDIPPYETYEKLYEKLLTAIEE 744          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  324 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 614
            GY     VI+WFW  V+ F+ E + RLLQFVTGTS VP EGF+AL+G +G ++F I K +G I  LP AHTCFN+LD P YPS   L E+LL A+ E
Sbjct: 1502 GYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEK-WGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEE 1597          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  324 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 614
            GY     VI+WFW  V+ F+ E + RLLQFVTGTS VP EGF+AL+G +G ++F I K +G I  LP AHTCFN+LD P YPS   L E+LL A+ E
Sbjct: 1504 GYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEK-WGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEE 1599          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF2_MOUSE (E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  324 SPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 599
            S V++WFW+ V+ F +E +ARLLQFVTG+S+VPL+GF ALQG +G + F IH+     ++LP AHTCFN++D P Y S + L E+LL AI E
Sbjct:  650 SNVVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEE 741          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            YS    +I+WFWE++  +S E K+RLLQF TGTS++P+ GF  LQG  G +KF I KA G  + LP AHTCFN+LD P Y SK+ L+ +L +A+ E   GFG
Sbjct:  666 YSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRKFTIEKA-GEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLSIAVEE-TIGFG 765          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            SGY    PVIQWFWEVV+  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L  PEYPSK+ L++RLL+A+H G+ G+
Sbjct:  804 SGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 906          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            SGY    PVIQWFWEVV+  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L  PEYPSK+ L++RLL+A+H G+ G+
Sbjct:  804 SGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 906          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF2_HUMAN (E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  324 SPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 599
            S +++WFW+ V+ F +E +ARLLQFVTG+S+VPL+GF ALQG +G + F IH+     ++LP AHTCFN++D P Y S + L E+LL AI E
Sbjct:  650 SNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEE 741          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF2_DANRE (E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.040e-23
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  324 SPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 599
            S +++WFW  V+ + +E +ARLLQFVTG+S+VPL+GF ALQG +G + F IH+   S ++LP AHTCFN++D P Y S   L ++LL AI E
Sbjct:  667 SNIVKWFWRAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDASTNNLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEE 758          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.040e-23
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+    ++ WFWE++  +S E KA+LLQF TGTS++PL GF  + G  G +KF I K  G I  LP AHTCFN+LD P Y SK+ LE++L +AI E   GFG
Sbjct:  570 YTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDGPRKFTIEKV-GHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQE-TAGFG 669          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SMUF2_XENLA1.217e-2353.26E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laev... [more]
HECW1_MOUSE2.076e-2355.67E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
HECW1_HUMAN2.076e-2355.67E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
SMUF2_MOUSE3.541e-2354.35E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus... [more]
PUB1_SCHPO3.541e-2351.96E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
HACE1_MOUSE3.541e-2350.49E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]
HACE1_HUMAN3.541e-2350.49E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
SMUF2_HUMAN4.625e-2353.26E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens... [more]
SMUF2_DANRE6.040e-2352.17E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio ... [more]
PUB2_SCHPO6.040e-2350.98E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
back to top