DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF1_XENLA (E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  324 AASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 605
            A S ++QWFW+ V+ F +E +ARLLQFVTG+++VPL+GF ALQG +G+   + F IH    + D+LP AHTCFN++D P Y S + L E+LL A+ E
Sbjct:  628 ANSNIVQWFWQAVESFDEERRARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 724          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            SGY     VIQWFWEVVQ  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L  PEYPSK+ L++RLL+A+H G+ G+
Sbjct:  839 SGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTANLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 941          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECW2_MOUSE (E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  324 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 614
            GY     VI+WFW  V+ F+ E + RLLQFVTGTS +P EGF++L+G +G ++F + K +G I  LP AHTCFN+LD P YPS   L E+LL A+ E
Sbjct: 1476 GYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEK-WGKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEE 1571          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECW2_HUMAN (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  324 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 614
            GY     VI+WFW  V+ F+ E + RLLQFVTGTS +P EGF++L+G +G ++F + K +G I  LP AHTCFN+LD P YPS   L E+LL A+ E
Sbjct: 1470 GYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEK-WGKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEE 1565          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            SGY     VIQWFWEVVQ  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L  PEYPSK+ L++RLL+A+H G+ G+
Sbjct:  807 SGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 909          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae GN=RSP5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614
            GY  +  VIQWFW+ V  +  E +ARLLQF TGTS++P+ GF  LQG  G ++F I KA G +  LP +HTCFN++D P+Y     ++++L LA+ E   GFG
Sbjct:  707 GYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKA-GEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE-TIGFG 807          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NED4L_PONAB (E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            +GY    PVIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F I + +GS + LP AHTCFN+LD P Y + + L E+LL+A+ E  +GF
Sbjct:  855 NGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ-WGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQGF 955          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NED4L_MOUSE (E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            +GY    PVIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F I + +GS + LP AHTCFN+LD P Y + + L E+LL+A+ E  +GF
Sbjct:  900 NGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ-WGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQGF 1000          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NED4L_HUMAN (E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            +GY    PVIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F I + +GS + LP AHTCFN+LD P Y + + L E+LL+A+ E  +GF
Sbjct:  871 NGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ-WGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQGF 971          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF1_MOUSE (E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  324 AASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 605
            A S +++WFW+ V+ F +E +ARLLQFVTG+++VPL+GF ALQG +G+   + F IH    + D+LP AHTCFN++D P Y S + L E+LL A+ E
Sbjct:  628 ADSNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 724          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SMUF1_XENLA1.030e-2251.55E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laev... [more]
HACE1_XENLA1.030e-2250.49E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
HECW2_MOUSE1.757e-2252.58E3 ubiquitin-protein ligase HECW2 OS=Mus musculus ... [more]
HECW2_HUMAN1.757e-2252.58E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens ... [more]
HACE1_XENTR1.757e-2250.49E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
RSP5_YEAST2.295e-2247.57E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces ... [more]
NED4L_PONAB3.915e-2251.46E3 ubiquitin-protein ligase NEDD4-like OS=Pongo ab... [more]
NED4L_MOUSE3.915e-2251.46E3 ubiquitin-protein ligase NEDD4-like OS=Mus musc... [more]
NED4L_HUMAN3.915e-2251.46E3 ubiquitin-protein ligase NEDD4-like OS=Homo sap... [more]
SMUF1_MOUSE5.113e-2250.52E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
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