DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.148e-20
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+  S  I WFW+ V+    E + RLLQFVTGT ++PL GF+ L G +G QKF I K  G    LP +HTCFN+LD P Y S + L+E+LL AI E  EGFG
Sbjct:  821 YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKV-GKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 920          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SUDX_DROME (E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = -1
Query:  309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611
            Y+  S  + WFW+ V+    E +ARLLQFVTGT +VP+ GF+ L G +G Q+F I K  G    LP +HTCFN+LD P Y S   L E+L  AI E  EGF
Sbjct:  848 YNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKV-GKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEE-TEGF 946          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF1_DROME (E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.626e-18
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = -1
Query:  324 IQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIH-KAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 590
            + WFW+VV+ +S E +ARLLQFVTG+S+VPL+GF ALQG +G+   + F IH  A     +LP AHTCFN++D P Y + Q L ++L  A+ E
Sbjct:  962 VLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQGSTGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAVEE 1054          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.458e-16
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = -1
Query:  306 VIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 593
            V++WFW VV   ++E+ ARLLQF TG+S++P  GF+AL        FQI  A  +   LP+AHTCFNQL  P Y S + +   L LAI EG EGFG
Sbjct:  732 VMRWFWAVVSSLTQEELARLLQFTTGSSQLPPGGFAAL-----CPSFQIIAA-PTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFG 821          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.458e-16
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = -1
Query:  306 VIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 593
            V++WFW VV   ++E+ ARLLQF TG+S++P  GF+AL        FQI  A  +   LP+AHTCFNQL  P Y S + +   L LAI EG EGFG
Sbjct:  732 VMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAAL-----CPSFQIIAA-PTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFG 821          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.549e-15
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  303 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 614
            G+   SPV+QWFWE++       + +LL FVTG+ +VP  G + +        F+I +     D LP +HTCFN++   EY  K+ L  +L++A+ E ++G+GF
Sbjct:  743 GFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTI-------PFRISRIRSGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEE-SQGYGF 838          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.033e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614
            GY+     I++FW+VV GF  E + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL  P Y S++ L+++L++ I   +EGFG
Sbjct:  678 GYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNWLPVAHTCFNQLCLPPYKSRKDLKQKLIIGI-SNSEGFG 772          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = -1
Query:  306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614
            GY+  S +I+ FWE+V  F+ E K   LQF TGT + P+ G        G  K  I K     + LP++HTCFN L  PEY SK+ L+ERLL AI    +GFG
Sbjct:  779 GYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL-------GKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYA-KGFG 873          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614
            GY+     I++FW+VV GF  + + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL  P Y SK+ L+++L++ I   +EGFG
Sbjct:  680 GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLN-------FKISKNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGI-SNSEGFG 774          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614
            GY+     I++FW+VV GF  + + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL  P Y SK+ L+++L++ I   +EGFG
Sbjct:  680 GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLN-------FKISKNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGI-SNSEGFG 774          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WWP1_HUMAN2.148e-2051.96NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]
SUDX_DROME5.291e-1949.50E3 ubiquitin-protein ligase Su(dx) OS=Drosophila m... [more]
SMUF1_DROME2.626e-1850.54E3 ubiquitin-protein ligase Smurf1 OS=Drosophila m... [more]
K0317_MOUSE2.458e-1650.00Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]
K0317_HUMAN2.458e-1650.00Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
HUL4_ASHGO3.549e-1536.54Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
HECD2_MOUSE1.033e-1441.75Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
UBE3A_HUMAN1.349e-1444.66Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
HECD2_PONAB1.349e-1441.75Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN1.349e-1441.75Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
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