DC900316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14 Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -1 Query: 330 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAI 614 GYSA PVI+ FW VV+GF+ E+K +LL+FVT S+ PL GF L F IH ++ LP+A TC N L PE+ + L +LL AI Sbjct: 985 GYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAI 1074
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14 Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -1 Query: 330 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAI 614 GYSA PVI+ FW VV+GF+ E+K +LL+FVT S+ PL GF L F IH ++ LP+A TC N L PE+ + L +LL AI Sbjct: 985 GYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAI 1074
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13 Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -1 Query: 330 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAI 614 GY A VI FWEV++ FS E++ + L+FVTG S+ PL GF L+ Q+ + S+D LP++ TC N L P Y SK+ LE +L+ AI Sbjct: 926 GYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAI 1020
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.544e-13 Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = -1 Query: 306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614 GY+ S VI+ FWE+V F+ E K L F TGT + P+ G G K I K + LP++HTCFN L PEY SK+ L RLL AI +GFG Sbjct: 789 GYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGL-------GKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYA-KGFG 883
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13 Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -1 Query: 303 ISGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 620 + G+S S + WFWE+++ + + +LLQFVT + ++P G S + K + ++ S D LP AHTCFN++ Y SK+ LE +LL AI+E +EG+GF Sbjct: 793 VGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI-----PFKISLLGSHDS-DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINE-SEGYGF 891
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13 Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = -1 Query: 309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611 YSA P ++ FWE F E K + L F+TG+ ++P+ G ++LQ + I ++LP AHTC+N LD P+Y SK+ L RL A+ + EGF Sbjct: 955 YSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIV-------IQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQAL-DNYEGF 1047
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-13 Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = -1 Query: 303 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 614 GY SP I FWEV++ F +EDK ++FVT ++ P+ GF AL F I LP+A TC N L P Y +KQ L ++LL A+ G GFGF Sbjct: 931 GYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALM-----PSFCIRVNGEDETRLPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSG-VGFGF 1028
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12 Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -1 Query: 309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611 Y A P I+ FWEV E K + L F+TG+ ++P+ G +L K I G ++LP +HTCFN LD P+Y K+ L +L+ AI + NEGF Sbjct: 962 YWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAI-DHNEGF 1054
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12 Identity = 47/113 (41.59%), Postives = 60/113 (53.10%), Query Frame = -1 Query: 309 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHK---------AYG--SIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 614 GYS +S I+ FWEV++GF ++ LL+FVT S+ PL GF LQ F IHK A G ++ LPSA TC+N L P Y + E+LL AI N GF Sbjct: 1033 GYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQ-----PTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKLLYAI-TSNAGF 1139
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12 Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = -1 Query: 309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611 Y A P I+ FWEV E K + L F+TG+ ++P+ G +L K I G +LP +HTCFN LD P+Y K+ L +L+ AI + NEGF Sbjct: 962 YWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054 The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bpback to top |