DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -1
Query:  330 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAI 614
            GYSA  PVI+ FW VV+GF+ E+K +LL+FVT  S+ PL GF  L        F IH     ++ LP+A TC N L  PE+  +  L  +LL AI
Sbjct:  985 GYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAI 1074          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -1
Query:  330 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAI 614
            GYSA  PVI+ FW VV+GF+ E+K +LL+FVT  S+ PL GF  L        F IH     ++ LP+A TC N L  PE+  +  L  +LL AI
Sbjct:  985 GYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAI 1074          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  330 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAI 614
            GY A   VI  FWEV++ FS E++ + L+FVTG S+ PL GF  L+     Q+     +  S+D LP++ TC N L  P Y SK+ LE +L+ AI
Sbjct:  926 GYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAI 1020          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.544e-13
Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  306 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 614
            GY+  S VI+ FWE+V  F+ E K   L F TGT + P+ G        G  K  I K     + LP++HTCFN L  PEY SK+ L  RLL AI    +GFG
Sbjct:  789 GYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGL-------GKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYA-KGFG 883          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  303 ISGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 620
            + G+S  S  + WFWE+++ +    + +LLQFVT + ++P  G S +       K  +  ++ S D LP AHTCFN++    Y SK+ LE +LL AI+E +EG+GF
Sbjct:  793 VGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI-----PFKISLLGSHDS-DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINE-SEGYGF 891          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = -1
Query:  309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611
            YSA  P ++ FWE    F  E K + L F+TG+ ++P+ G ++LQ +       I       ++LP AHTC+N LD P+Y SK+ L  RL  A+ +  EGF
Sbjct:  955 YSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIV-------IQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQAL-DNYEGF 1047          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-13
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = -1
Query:  303 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 614
            GY   SP I  FWEV++ F +EDK   ++FVT  ++ P+ GF AL        F I         LP+A TC N L  P Y +KQ L ++LL A+  G  GFGF
Sbjct:  931 GYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALM-----PSFCIRVNGEDETRLPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSG-VGFGF 1028          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -1
Query:  309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611
            Y A  P I+ FWEV      E K + L F+TG+ ++P+ G  +L       K  I    G  ++LP +HTCFN LD P+Y  K+ L  +L+ AI + NEGF
Sbjct:  962 YWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAI-DHNEGF 1054          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 47/113 (41.59%), Postives = 60/113 (53.10%), Query Frame = -1
Query:  309 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHK---------AYG--SIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 614
            GYS +S  I+ FWEV++GF   ++  LL+FVT  S+ PL GF  LQ       F IHK         A G   ++ LPSA TC+N L  P Y     + E+LL AI   N GF
Sbjct: 1033 GYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQ-----PTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKLLYAI-TSNAGF 1139          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = -1
Query:  309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611
            Y A  P I+ FWEV      E K + L F+TG+ ++P+ G  +L       K  I    G   +LP +HTCFN LD P+Y  K+ L  +L+ AI + NEGF
Sbjct:  962 YWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
UBE3C_MOUSE1.761e-1445.26Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]
UBE3C_HUMAN1.761e-1445.26Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
UPL6_ARATH1.142e-1343.16E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_MOUSE2.544e-1343.69Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
HUL4_YEAST3.322e-1338.68Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
HERC3_HUMAN5.666e-1338.61Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
YFK7_SCHPO7.401e-1341.35Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
HERC4_HUMAN1.262e-1239.60Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
UPL7_ARATH1.649e-1241.59E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
HERC4_RAT6.265e-1239.60Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
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